View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_24 (Length: 263)
Name: NF3372_low_24
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 53781969 - 53782198
Alignment:
| Q |
1 |
tttggagaatgtatttgatgattaacttgaacttgaactggaggagttgagattgccagagaactctgttttttcactatttccgccacttcctccataa |
100 |
Q |
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| T |
53781969 |
tttggagaatgtatttgatgattaacttgaacttgaactggaggagttgagattgccagagaactctgttttttcactatttccgccacttcctccataa |
53782068 |
T |
|
| Q |
101 |
tgttaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttagtgtttatgttagcacttagcatatttggttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53782069 |
tgttaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttagtgtttatgttagcacttagcatatttggttat |
53782168 |
T |
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| Q |
201 |
atatatagtataacataaagacgtgaatgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53782169 |
atatatagtataacataaagacgtgaatgt |
53782198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 2093996 - 2094133
Alignment:
| Q |
70 |
tttttcactatttccgccacttcctccataatgttaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttagt |
169 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2093996 |
tttttcactatttccaccacttcctccataatgctaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttgga |
2094095 |
T |
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| Q |
170 |
gtttatgttagcacttagcatatttggttatatatata |
207 |
Q |
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| T |
2094096 |
gtttatgttagcacttagcatatttggttatatatata |
2094133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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