View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_31 (Length: 244)
Name: NF3372_low_31
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40942659 - 40942884
Alignment:
| Q |
1 |
tgtttcattgaatgttggaacaaacttatccttattcacgattttgttcgataggtttatttaggagattgaaaacatgaataaaaatctatccaactgt |
100 |
Q |
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| T |
40942659 |
tgtttcattgaatgttggaacaaacttgtccttattcacgattttgttcgataggtttatttaggagattgaaaacatgaataaaaatctatccaactgt |
40942758 |
T |
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| Q |
101 |
tatgtttgcaggcaggatatttgcttcatgatcgtgttattcggccagcggaagttggtgtaacccaagcaaaagaaaatggcaattcagctgaatgatg |
200 |
Q |
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| T |
40942759 |
tatgtttgcaggcaggatatttgcttcatgatcgtgttattcggccagcggaagttggtgtaacccaagcaaaagaaaatggcaattcagctgaatgatg |
40942858 |
T |
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| Q |
201 |
gtaaagataatatagctgataaggat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40942859 |
gtaaagataatatagctgataaggat |
40942884 |
T |
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