View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_33 (Length: 242)
Name: NF3372_low_33
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 53781679 - 53781902
Alignment:
| Q |
19 |
acatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaag |
118 |
Q |
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| T |
53781679 |
acatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaag |
53781778 |
T |
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| Q |
119 |
caaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaacttcttca |
218 |
Q |
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| T |
53781779 |
caaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaacttcttca |
53781878 |
T |
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| Q |
219 |
agaatgttttcaatgactttcttc |
242 |
Q |
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| T |
53781879 |
agaatgttttcaatgactttcttc |
53781902 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 9244052 - 9244133
Alignment:
| Q |
55 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
136 |
Q |
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| T |
9244052 |
accaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcata |
9244133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 9257719 - 9257800
Alignment:
| Q |
55 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
136 |
Q |
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| T |
9257719 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
9257800 |
T |
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