View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_37 (Length: 226)
Name: NF3372_low_37
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 52248869 - 52248720
Alignment:
| Q |
61 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248869 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
52248770 |
T |
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| Q |
161 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgcctt |
210 |
Q |
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| T |
52248769 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgcctt |
52248720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 41125094 - 41124975
Alignment:
| Q |
91 |
cataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttttaaaaaataaaactcttacctctttgaatc |
190 |
Q |
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|||||||||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||| ||| || |||||| ||||||||||||||| |
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| T |
41125094 |
cataaagtaatgcagaaaaccaaatactacagtcaaaatgcccctccaaacctaatgaagaaacagtttaaggaaggaaaaactgttacctctttgaatc |
41124995 |
T |
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| Q |
191 |
tgtaaatattaggatgcctt |
210 |
Q |
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|| |||||||||||||||| |
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| T |
41124994 |
tgataatattaggatgcctt |
41124975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 41118927 - 41118784
Alignment:
| Q |
61 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
160 |
Q |
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||||||||||||||||| |||| |||| | ||||||| |||||||||||||| | ||||| |||| |||| ||||||||| ||||||||| ||| |
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| T |
41118927 |
aagtgtgtaaaatgagagcagtaagca-----tgaagtaatacagataaccaaatactgcattcataatggccctacaaacctaatgaagaaacagttta |
41118833 |
T |
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| Q |
161 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgcctt |
210 |
Q |
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||| | |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
41118832 |
agaaaga-aaaactgttacctctttgaatctgataatattaggatgcctt |
41118784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 52248959 - 52248917
Alignment:
| Q |
18 |
gtgcttggataccattgaatgatagtagctaacaccagatatt |
60 |
Q |
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| T |
52248959 |
gtgcttggataccattgaatgatagtagctaacaccagatatt |
52248917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 41119700 - 41119665
Alignment:
| Q |
26 |
ataccattgaatgatagtagctaacaccagatatta |
61 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
41119700 |
ataccattgaatgacagtagctaacaccagatatta |
41119665 |
T |
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