View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_38 (Length: 225)
Name: NF3372_low_38
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 12617649 - 12617445
Alignment:
| Q |
20 |
ttctgtcatgtttgatcatctgattgattctgattataaaatatttattaattaaaatagcaatacatcgttagatatatgtgtaaaataattttacacc |
119 |
Q |
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| T |
12617649 |
ttctgtcatgtttgatcatctgattggttctgattataaaatatttattaattaaaatagcaatacatcattagatacatgtgtaaaataattttacacc |
12617550 |
T |
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| Q |
120 |
acc---gtagagtaattaaactctctcaaaataatttttcctataaatgttttagtggattcgataatactaggcactagctatacatacatgtcctttg |
216 |
Q |
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| T |
12617549 |
accaatgtagagtaattaaactctctcaaaataatttttcctataaatgttttagtggattcgataatactaggcactagctatacatacatgtcctttg |
12617450 |
T |
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| Q |
217 |
ctact |
221 |
Q |
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|||| |
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| T |
12617449 |
atact |
12617445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 26514959 - 26515000
Alignment:
| Q |
77 |
tagcaatacatcgttagatatatgtgtaaaataattttacac |
118 |
Q |
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| T |
26514959 |
tagcaatatatcgtcagatatatgtgtaaaataattatacac |
26515000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 34820175 - 34820211
Alignment:
| Q |
80 |
caatacatcgttagatatatgtgtaaaataattttac |
116 |
Q |
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| T |
34820175 |
caatacatcattagatatatgtgtagaataattttac |
34820211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 31580941 - 31580901
Alignment:
| Q |
79 |
gcaatacatcgttagatatatgtgtaaaataattttacacc |
119 |
Q |
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| T |
31580941 |
gcaacacatcattagatatatgtgtaaaataattgtacacc |
31580901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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