View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3372_low_40 (Length: 204)
Name: NF3372_low_40
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 8277103 - 8277274
Alignment:
| Q |
15 |
cacagacagcatagagccaattttaccaaaattccggtattcagaaccaacaaaagaaggattcttattcagaaatcaagcttgtgaggcaatgcatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8277103 |
cacagacagcatagagccaattttaccaaaattccggtattcagaaccaacaaaagaaggattcttattcagaaatcaagcttgtgaggcaatgcatgaa |
8277202 |
T |
|
| Q |
115 |
tcttacacagaagtgattcatgaagttaaacacaaagatgttggcacagaaatgactccattgggaagttcc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8277203 |
tcttacacagaagtgattcatgaagttaaacacaaagatgttggcacagaaatgactccattaggaagttcc |
8277274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University