View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_5 (Length: 513)
Name: NF3372_low_5
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_5 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Complemental strand, 96197 - 95714
Alignment:
| Q |
20 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96197 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
96098 |
T |
|
| Q |
120 |
aattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
96097 |
aattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatct |
95998 |
T |
|
| Q |
220 |
caaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
95997 |
caaaaacacgactgaatccccagaagcaagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaaca |
95898 |
T |
|
| Q |
320 |
tgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95897 |
tgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcac |
95798 |
T |
|
| Q |
420 |
aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95797 |
aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
95714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Complemental strand, 88189 - 87698
Alignment:
| Q |
20 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
119 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| ||| |
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|
| T |
88189 |
catcacttattagcaatccattacctttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcaca |
88090 |
T |
|
| Q |
120 |
aattccaattccactaccatatttccaccctgac--------gactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||||||||| |
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|
| T |
88089 |
aattccaattccactaccagatttccaccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttt |
87990 |
T |
|
| Q |
212 |
tcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccc |
311 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
87989 |
tcagatctcaaaaacacaatcgaatccccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccc |
87890 |
T |
|
| Q |
312 |
tataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcat |
411 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | | |
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|
| T |
87889 |
tataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgt |
87790 |
T |
|
| Q |
412 |
ttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
87789 |
ttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
87698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 40870085 - 40870568
Alignment:
| Q |
20 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870085 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
40870184 |
T |
|
| Q |
120 |
aattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40870185 |
aattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatct |
40870284 |
T |
|
| Q |
220 |
caaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40870285 |
caaaaacacgactgaatccccagaagcaagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaaca |
40870384 |
T |
|
| Q |
320 |
tgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870385 |
tgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcac |
40870484 |
T |
|
| Q |
420 |
aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870485 |
aatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
40870568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 40878094 - 40878585
Alignment:
| Q |
20 |
catcacttattagtaatccattgcctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggaca |
119 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
40878094 |
catcacttattagcaatccattacctttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcaca |
40878193 |
T |
|
| Q |
120 |
aattccaattccactaccatatttccaccctgac--------gactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||||||||| |
|
|
| T |
40878194 |
aattccaattccactaccagatttccaccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttt |
40878293 |
T |
|
| Q |
212 |
tcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccc |
311 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878294 |
tcagatctcaaaaacacaatcgaatccccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccc |
40878393 |
T |
|
| Q |
312 |
tataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcat |
411 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | | |
|
|
| T |
40878394 |
tataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgt |
40878493 |
T |
|
| Q |
412 |
ttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878494 |
ttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
40878585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 487
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
398 |
cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
487 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 471
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
392 |
tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa |
471 |
Q |
| |
|
|||| |||||| |||||| | || |||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
| Q |
416 |
gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
486 |
Q |
| |
|
||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||||||| |
|
|
| T |
42730210 |
gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
433 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
487 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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