View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3372_low_7 (Length: 440)
Name: NF3372_low_7
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 4155129 - 4155538
Alignment:
| Q |
8 |
cgaagaatatataaattatta---ttaagtgttaacattgatttttggttttgacagagaactactaaaaggatggagcaattcgtcaatgaaacatcta |
104 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
4155129 |
cgaaaaatatataaattattaatattaagtgttaacattgatttttggttttgacagagaactactaaaaggatggagcaattcgtgaatgaaacatata |
4155228 |
T |
|
| Q |
105 |
tcataatcaaggttaataaggacataactggaaatactcctgcaaattcatccgtcttcaagtttatcggtttattggtttgagaaggctgatggatttt |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4155229 |
tcataatcaaggttaataaggacataattggagatactcctgcaaattcatccatcttcaagtttatcggtttattggtttgagaaggctgatggatttt |
4155328 |
T |
|
| Q |
205 |
cagaagtatttcaaggcatgtacttaatatatcaagt--aaatatttgctactagtgttgtgcaaatatctccactttttgtgcttggaagttaaatgg- |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4155329 |
caagagtatttcaaggcatgtacttaatatatcaagtaaaaatatttgctactagtgttgtgtaaatatctccactgtttgtgcttggaagttaaatggc |
4155428 |
T |
|
| Q |
302 |
--------cagtggtatttttctagacaatggaagatacaattattttt-ggtaaattaataatttacattccttaattaactaattatgatcgctaaat |
392 |
Q |
| |
|
|| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4155429 |
actaaggacaatggtatttttctag------------acaattatttttgggtaaattaataatttacattccttaattaactaattatcatcgctaaat |
4155516 |
T |
|
| Q |
393 |
aggaaaaatcctaagcgtgtat |
414 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4155517 |
aggaaaaatcctaagcgtgtat |
4155538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 26789966 - 26789852
Alignment:
| Q |
44 |
gatttttggttttgacagagaac-tactaaaaggatggagcaattcgtcaatgaaacatc-tatcataatcaaggttaataaggacataactggaaatac |
141 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||||| |||| ||| || ||||| |||||||||||| ||||| ||| |||||||||| |
|
|
| T |
26789966 |
gatttttggttttgacaggaaacctattaaaaggatggagcaattcgacaatcaaaattcctatcaaaatcaaggttaacaaggatatacctggaaatac |
26789867 |
T |
|
| Q |
142 |
tcctgcaaattcatc |
156 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
26789866 |
tccagcaaatccatc |
26789852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University