View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_8 (Length: 411)
Name: NF3372_low_8
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 6266072 - 6265679
Alignment:
| Q |
7 |
tggacatcatcagcttaactgatcctacgaagattatcgatggagccttagatgggtttggatcgatttttgatacacttacttcctttctgggtcgatc |
106 |
Q |
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| T |
6266072 |
tggacatcaacagcttaactgatcctacgaagattatcgatggagccttagatgggtttggatcgatttttgatacacttacttcctttctgggtcgatc |
6265973 |
T |
|
| Q |
107 |
gatttgtctccagttaattagctctactaaaactgggtgtaagnnnnnnnngtcgaattacaaagtgaaaaattaatgtttgggataaggaacatgctcc |
206 |
Q |
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| T |
6265972 |
gatttgtctccagttaattagctctactaaaattgggtgtaagttttttttgtcgaattagaaagtgaaaaattaatgtttgagataaggaacatgctcc |
6265873 |
T |
|
| Q |
207 |
tttttcccaataactcttgactaactaaaattattctccatcttggtacaaattaatttatgctttataagtaactttatgt-----tttatgcatattt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6265872 |
tttttcccaataactcttgactaactaaaattattctccatcttggtacaaattaatttatgctttataagtaactttatgttttaatttatgcatattt |
6265773 |
T |
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| Q |
302 |
ttcagtaactggggaagggaaacttggaaaagaagcttatttaaaagaggcaattaacaatttgccaacattgggagataaacaaacagctttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6265772 |
ttcagtaactggggaagggaaacttggaaaagaagcttatttaaaagaggcaattaacaatttgccaacattgggagataaacaaacagctttc |
6265679 |
T |
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