View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_9 (Length: 405)
Name: NF3372_low_9
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 34016606 - 34016996
Alignment:
| Q |
1 |
caagttgacacggtacaatctcaaaaacttcaactaccaaacccatcttccctttcaccaatccaatttcactgttcttcccaacctcaactttaaaccc |
100 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
34016606 |
caagttgacaaggcacaatctcaaaaacttcaactaccaaacccaccttccctttcaccaatccaattgcactattcttcccaacctcaaccttaaaccc |
34016705 |
T |
|
| Q |
101 |
caaaacccctcccacttccttcaccttttcctccacacattcaatctttgcacttgaagtaaacctcttctccctccatgtattattattattaccacct |
200 |
Q |
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|||||| |||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016706 |
caaaactcctcccacttccttcaccttttcccccaccacttcaatgtttgcactagaagtaaacctcttctccctccatgtattattattattaccacct |
34016805 |
T |
|
| Q |
201 |
tgagaagacgacgtcgtttcaaataaaccactcaaatccaaacccgaagacatagatattatatgaaacgcattcaaacctaaatttttcccttccttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016806 |
tgagaagacgacgtcgtttcaaataaaccactcaaatccaaacccgaagacatagatattatatgaaacgcattcaaacctaaatttttcccttccttcc |
34016905 |
T |
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| Q |
301 |
cataatcacacccgaatatactcttttccggttcagcttcgggtttcaacgatttcttaaaccattcattgccaaataaaccctccaaact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016906 |
cataatcacacccgaatatactcttttccggttcagcttcgggttttaacgatttcttaaaccattcattgccaaataaaccctccaaact |
34016996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 15171367 - 15171431
Alignment:
| Q |
212 |
cgtcgtttcaaataaaccactcaaatccaaacccgaagacatagatattatatgaaacgcattca |
276 |
Q |
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|||||||||||| ||||||||||||| ||||||||| |||| |||||||||| ||||||||||| |
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| T |
15171367 |
cgtcgtttcaaacaaaccactcaaattcaaacccgacgacaacgatattatatcaaacgcattca |
15171431 |
T |
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