View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3373_high_2 (Length: 742)
Name: NF3373_high_2
Description: NF3373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3373_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 27819203 - 27819534
Alignment:
| Q |
17 |
acatttaccaattcaaattatgaga----gagagaaggctggttttggctaaagttaattggcactgagaaggtgacaagaacagcaactattttcatat |
112 |
Q |
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| T |
27819203 |
acatttaccaattcaaattatgagagagagagagaaggctggttttggctaaagttaattggcactaagaaggtgacaagaacagcaactattttcatat |
27819302 |
T |
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| Q |
113 |
aattgatgaaataaagaatacaactaagatgtaatcaatgcaaatcattgagttcttcaacacatgatagttgctgccaaacttcaatgcaaatatttga |
212 |
Q |
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| T |
27819303 |
aattgatgaaataaagaatacaactaagatgtaatcaatgcaaatcattgagttcttcaacacatgatagttgctgccaaacttcaatgcaaatatttga |
27819402 |
T |
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| Q |
213 |
ttagtacaaaccaatagcaatggtaaatttcaaattcaagataatctctagagttttagctgatagattgtcccagataatgcccaacaacatttcaaag |
312 |
Q |
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| T |
27819403 |
ttagtacaaaccaatagcaatggtaaatttcaaattcaagataatctctagagttttagctgatagattgtcccagataatgcccaacatcatttcaaag |
27819502 |
T |
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| Q |
313 |
gagcaaagggatttcataaaaggcataaacat |
344 |
Q |
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| T |
27819503 |
gagcaaaggggtttcataaaaggcataaacat |
27819534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 354 - 581
Target Start/End: Original strand, 27819589 - 27819816
Alignment:
| Q |
354 |
tatatgtgtcgcttataaggcaactaacattttacacaacaaagttttggtagtaatctatttctgaaaaatagatataaccaaagctttcgataccttg |
453 |
Q |
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| T |
27819589 |
tatatgtgtcgcttataaggcaactaacattttacacaacaaagttttggtagtaatctatttctgaaaaatagatgtaaccaaagctttt-ataccttg |
27819687 |
T |
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| Q |
454 |
gagtggtctttttt-ctcaaagtattgaaaggatttaggttcaatctagtgttctgcagttggattgaagccattttcaaattagcaactctatctatat |
552 |
Q |
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| T |
27819688 |
gagtggtcttttttgctcaaagtattgaaaggatttaggttcaatctagtgttctgcagttggattgaagccattttcaaattagcaactctatctatat |
27819787 |
T |
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| Q |
553 |
atctattgatggtgaaatgcatggttact |
581 |
Q |
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| T |
27819788 |
atctattgatggtgaaatgcatggttact |
27819816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 27819558 - 27819590
Alignment:
| Q |
355 |
atatgtgtcgcttataaggcaactaacatttta |
387 |
Q |
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| T |
27819558 |
atatgtgtcgcttataaggcaactaacatttta |
27819590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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