View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3373_low_3 (Length: 719)
Name: NF3373_low_3
Description: NF3373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3373_low_3 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 248 - 719
Target Start/End: Complemental strand, 39360661 - 39360186
Alignment:
| Q |
248 |
agtttaaaatgataaaaattagtttgaacgaaagtgtatcttctttatatattggtataaatattacaaatatgataataatttgtatgcatgtt-aaaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
39360661 |
agtttaaaatgataaaaattagtttgaacgaaagtgtaacttctttatatattggtataaatattacaaatatcataataatttgtatgcatgtttaaaa |
39360562 |
T |
|
| Q |
347 |
tcattctatcaaataatctacctgcaaacactgcgacgatcaactaagatatgtagttcgggtattagttagtactgaaatttttagtccatagaaccta |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39360561 |
tcattctatcaaataatctacctgcaaacactgcaacgatcaactaagatatgtagtttgggtattagttagtactgaaatttttagttcatagaaccta |
39360462 |
T |
|
| Q |
447 |
gaagtccatgtgtgaacctacgtctttgctatgttgaagtaatatgatgactgttgtttgtttcctgttaattcactggacatatttaggttggaaccga |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39360461 |
gaagtccatgtgtgaacctacgtctttgctatgttgaaataatatgacgaatgttgtttgtttcctgttaattcactggacatatttaggttggaaccga |
39360362 |
T |
|
| Q |
547 |
aaaatgtaaaaagtctatatatagcaagcttcacctccaatccaagaaacaaaattttacaaaattcttcttcttactttctcttaaacctgctcccc-- |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39360361 |
aaaatgtaaaaagtctatatatagcaagcttcacctccaatccaagaaacaaaattttacaaaattcttcttctttctttctcttaaacctgctccccat |
39360262 |
T |
|
| Q |
645 |
-atcaacatcatcaaccataatttatccaatttccataaacatgggcggattcaacttacctgttaggtttttctc |
719 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||| ||||| ||| ||||| |
|
|
| T |
39360261 |
catcatcatcatcatccataatttatccaatttccttaaacttgggcagattcaacttacttgttatgttgttctc |
39360186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 39360901 - 39360772
Alignment:
| Q |
8 |
tgagatgaagtcatatggatggtaatagaagtacaaatgataatattgtgagaaaaatatattatgttaacacataatannnnnnnagataagatcaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39360901 |
tgagatgaagtcatatggatggtaatagaagtacaaatgataatattgtgagaaaaatatgttatgttaacacataatatttttttagataagatcaaaa |
39360802 |
T |
|
| Q |
108 |
taaggcatttatagtgttgaataaacattg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39360801 |
taaggcatttatagtgttgaataaacattg |
39360772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University