View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3373_low_4 (Length: 703)
Name: NF3373_low_4
Description: NF3373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3373_low_4 |
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| [»] scaffold0597 (2 HSPs) |
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| [»] scaffold0354 (2 HSPs) |
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Alignment Details
Target: scaffold0597 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 363 - 598
Target Start/End: Original strand, 92 - 326
Alignment:
| Q |
363 |
aagattccaatagttcaactggaactgaatttgttgatgctactcaggcaatcaacaatgatgatagtggttcaaatcacaatgaggtgcgggatgagga |
462 |
Q |
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| T |
92 |
aagattccagtagttcaactagaactgaatttgttgatgctactcaggcattcaacaatgataatattggttcaaatcacaatgatgtgaaggatgagga |
191 |
T |
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| Q |
463 |
agcagaaagtagtaataaggaatatgatattgtgcagaaggatataaattttttaaaagactctttgggccaatttagaagagttggacgctaatgacgg |
562 |
Q |
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| T |
192 |
agcagaaagcagtgataaggaatatgatattgtgtagaaggatataaattttttaaaagactc-ttgggccaatttagaagagttggaggctaatgatgg |
290 |
T |
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| Q |
563 |
agatataggggcaaatgttcagctagatattataac |
598 |
Q |
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| T |
291 |
tgatataggggcaaatgttcagctcgatattgtaac |
326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 587 - 686
Target Start/End: Original strand, 3521 - 3620
Alignment:
| Q |
587 |
agatattataactattaatattgtccctgaagttgctggtacaagtagattgacaggcaagctacctatttccattgtggtgtccaaacaagcagatgtt |
686 |
Q |
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| T |
3521 |
agatattatacctattaatgttgtccctgaagttgctggtacaagtagattgacaggcaagctacctatttccactgtggtgtccaaacaagcagatgtt |
3620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 138; Significance: 9e-72; HSPs: 2)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 14050 - 14215
Alignment:
| Q |
160 |
tgtttatgtgcctaagaagaataaggtgactgaagtggttaatgtggaagactcaggtacaaaagccaggagtccagatgatgttgatctcgaaatagaa |
259 |
Q |
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| T |
14050 |
tgtttatgtgcctaagaagaataaggtgcctgaagtggttaatgtggaagactcaggtacaaaagcaaggagtccatatgatgttgatctagaaatagaa |
14149 |
T |
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| Q |
260 |
atcaatgaggaaatttccaagagataggaagatcaagacactcatcatggtagaaataataatgtg |
325 |
Q |
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| T |
14150 |
atcaatgaggaaattttcaacagataggaagatcaagacactcatcatggtagaaataatgatgtg |
14215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 13711 - 13859
Alignment:
| Q |
10 |
aagaatattggtgttagaagattctgtttgctattgctagtggagtggggattccaatttgcactaacagtatcacaggtaaatcaatgcttgataggtc |
109 |
Q |
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| T |
13711 |
aagagtattggcgtcaaaagattctgtttgctattgctagtggagtggggattccaatttgcactgactgtatcacaggtaaatcaatgcttgataggtc |
13810 |
T |
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| Q |
110 |
ttttgggcattacgctagggttttaattgatttgaatttgaatgatgca |
158 |
Q |
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| T |
13811 |
ttttgggcattacgctagggttttaattgatttgaatttgaatgatgca |
13859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 15091859 - 15091738
Alignment:
| Q |
33 |
ctgtttgctattgctagtggagtggggattccaatttgcactaacagtatcacaggtaaatcaatgcttgataggtcttttgggcattacgctagggttt |
132 |
Q |
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| T |
15091859 |
ctgtttgctattgctagtggagttggaactccaatatgcacagataatattacttgtaaatccatgttagagagatcttttggccactatgctagggttt |
15091760 |
T |
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| Q |
133 |
taattgatttgaatttgaatga |
154 |
Q |
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| T |
15091759 |
tgattgatttgaatctgaatga |
15091738 |
T |
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