View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3373_low_5 (Length: 296)
Name: NF3373_low_5
Description: NF3373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3373_low_5 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 143073 - 142800
Alignment:
| Q |
1 |
tagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143073 |
tagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaat |
142974 |
T |
|
| Q |
101 |
caaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142973 |
caaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagca |
142874 |
T |
|
| Q |
201 |
agatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccctctgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142873 |
agatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccctctgtg |
142800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 45960606 - 45960869
Alignment:
| Q |
1 |
tagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaat |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45960606 |
tagctgttcttagtgcatattctgatctaaaaggtgtgaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaat |
45960705 |
T |
|
| Q |
101 |
caaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagca |
200 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45960706 |
caaatcagcgaagtgtttgcaagatttgcaattttgagtcaactccaattttttac---ttaacttttgaggataataatcttcaaagtagttaaaagca |
45960802 |
T |
|
| Q |
201 |
agatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacaccc |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
45960803 |
agatcaataaaactaaggcaattttccttattgctattgcaaccattcttttcacctaataacaccc |
45960869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 298457 - 298196
Alignment:
| Q |
1 |
tagctgttcttagtaca-tattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaa |
99 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| || ||||| ||||||| ||| ||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
298457 |
tagctgttcttagtacaatattctgatcaaaaaggtgtgatactttgtgatggactcataccattaacttgaatttctcttggaagataagtatatctaa |
298358 |
T |
|
| Q |
100 |
tcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagc |
199 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
298357 |
tcaaatcaatgaagtgtttgcaagatttgcaatttggagtcaactccaagtttttactta---acttttgaggataataaacttcaaagtagttaaaagc |
298261 |
T |
|
| Q |
200 |
aagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataaca |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
298260 |
aagatcaataaaactaacacaattttccttattgctattgaaaccattcttttcacctaataaca |
298196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University