View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3374_high_1 (Length: 702)

Name: NF3374_high_1
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3374_high_1
NF3374_high_1
[»] chr6 (12 HSPs)
chr6 (1-693)||(4369826-4370518)
chr6 (1-689)||(4365426-4366120)
chr6 (241-687)||(4360270-4360716)
chr6 (233-689)||(5725187-5725643)
chr6 (250-689)||(4414209-4414640)
chr6 (255-447)||(4389919-4390111)
chr6 (228-450)||(4377209-4377431)
chr6 (200-624)||(4384754-4385178)
chr6 (557-627)||(4390224-4390294)
chr6 (2-67)||(4360034-4360099)
chr6 (2-60)||(4414828-4414886)
chr6 (560-627)||(4377544-4377611)
[»] chr8 (1 HSPs)
chr8 (341-374)||(15658720-15658753)


Alignment Details
Target: chr6 (Bit Score: 685; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Original strand, 4369826 - 4370518
Alignment:
1 ttcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4369826 ttcctcggaagtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaa 4369925  T
101 atatcttttccttttgtgaaatgccgcattagagacttgacagaagggcttatataaataaaggctataagatcttgacatttcttagttatctctgagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
4369926 atatcttttccttttgtgaaatgccgcattagagacttgacagaagggcttacataaataaaggctataagatcttgacatttcttagttatctctgagt 4370025  T
201 gaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4370026 gaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctc 4370125  T
301 accaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4370126 accaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttg 4370225  T
401 tcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4370226 tcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcgt 4370325  T
501 caaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaata 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4370326 caaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaata 4370425  T
601 tttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgc 693  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4370426 tttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgc 4370518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 4365426 - 4366120
Alignment:
1 ttcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||||| |||||||    
4365426 ttcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtatagtatgatgtttgccattgatacatgcccaattttaaa 4365525  T
101 atatcttttccttttgtgaaatgccgcattagagacttgacagaagggcttatataaataaaggctataagatcttgacatttcttagttatctctgagt 200  Q
    |||||||||||||||||||| |||| || |||||||||||||||||| ||| ||| |||||||| |||||||   ||||| |||||| ||||||||||||    
4365526 atatcttttccttttgtgaagtgccacaatagagacttgacagaaggccttgtatgaataaaggttataagactctgacacttcttaattatctctgagt 4365625  T
201 gaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctc 300  Q
    ||||||||||||||  |||||||||| |||| ||| || ||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||      
4365626 gaataggtatattctcctcacagtcttccaatatcgtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcat 4365725  T
301 accaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttg 400  Q
    | |  | |||  | || ||  |||||  ||||||||||| |||||| |||||||||| |||||||||||||||| ||  ||||  |||  |||||||||     
4365726 agcggctgctgcgtagtattctgtatattccgtcacaatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttc 4365825  T
401 tcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctg--- 497  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| |       
4365826 tcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgt 4365925  T
498 ---cgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgt 594  Q
        |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
4365926 cactgtcagccgatccatcaaccattatggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgt 4366025  T
595 caaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct 689  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
4366026 caaatatttccctctaatctcatcataagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct 4366120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 241 - 687
Target Start/End: Original strand, 4360270 - 4360716
Alignment:
241 aatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatt 340  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||| ||||||||||| || |  |||||    || |||||||||  ||||| ||||      
4360270 aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg 4360369  T
341 tggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttca 440  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||  ||   ||||||||| |||| |||||||||||||||||  |||||||||| |||||    
4360370 tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttca 4360469  T
441 aaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttacctt 540  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||| ||||  |      || |    || |||| ||||||||| |||||||||| | |||    
4360470 aaaagaatgttccctttggactgttcagtaacaagtttagtatgttcctcttgggaaagttagtaaatacatcgaccattatgctgcaacctgtgatctt 4360569  T
541 ccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatcct 640  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||  |||||||||| || ||| |||    |   ||||||||||||||||    
4360570 ccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatccaatatcaaagaaccccggtggcttaaatcct 4360669  T
641 tcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcact 687  Q
     |||| |||||||||||||||||| |||| || ||||||||||||||    
4360670 acgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact 4360716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 233 - 689
Target Start/End: Complemental strand, 5725643 - 5725187
Alignment:
233 atcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccg 332  Q
    ||||||| ||||||   |||||||||||| |||||||||| |||||| ||||||| |||||||||||||||| |   |    || ||| || | ||||||    
5725643 atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagtatgttgcactgtccg 5725544  T
333 tcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaac--atatcagttgcatca 430  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||  ||||  |||  ||| ||||  ||||| ||     ||  ||||||| ||  |||    
5725543 tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtga-----acttatatcagctgattca 5725449  T
431 atagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtccta--ctc--tctgcgtcaaccgatccatcaaccattatggtg 526  Q
    | ||||||||||||||||||||| ||||||||||| || || ||||||| ||||  ||||  |||  ||| | |||  | |  |||| ||||||||||||    
5725448 acagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttct-catcataccagtcatcgaccattatggtg 5725350  T
527 caacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacg 626  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||  ||||||    
5725349 caacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacg 5725250  T
627 gtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct 689  Q
    |||||||||| ||| | || ||| ||||||||| |||| |||||||  |||||||||||||||    
5725249 gtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactct 5725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 250 - 689
Target Start/End: Complemental strand, 4414640 - 4414209
Alignment:
250 tgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaaca 349  Q
    |||||||||||| |||||||||| |||||| |||||| ||||| ||||||||||| || || || || | | ||||||||| ||||||||||||||||||    
4414640 tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca 4414541  T
350 ttttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatg 449  Q
    |||||||| ||||||||||| ||||| |  ||||  |||  ||||||||||| ||| |||||||||||||  |  |||||||  ||||||||||||||||    
4414540 ttttcttc-ccaacctcttctacaatttcatccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaatg 4414442  T
450 ttccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagc 549  Q
    |||  |   |  | |||||||| |  |||| |||| ||||  ||| || |||   | |||||||||||||||| ||| | |||      ||||| |||||    
4414441 ttc--tcctggttattcactaagatatttagtatgttcctcttctttgggtcggtccatccatcaaccattatagtgtaccct------ttccatatagc 4414350  T
550 tctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccc-tctaatctcatcataagacggtggcttaaatccttcgccttg 648  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||| | |||  |||||| |||| ||||||  |||||||   || ||    
4414349 tctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaacccatg 4414250  T
649 tcttgaaaccaaatcaaacatagttttaaattcatcactct 689  Q
    |||||||||||| | | |||||||  |||| ||||||||||    
4414249 tcttgaaaccaactgacacatagtaataaactcatcactct 4414209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 255 - 447
Target Start/End: Original strand, 4389919 - 4390111
Alignment:
255 cacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttc 354  Q
    ||||||| |||||||||| |||||| || ||||||||||||||||||||| |||||||| |  |||  ||||| |||||||||| ||| |||||||||||    
4389919 cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc 4390018  T
355 ttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaa 447  Q
    ||| ||||||||||||||||  |  ||||  |||  ||| | ||| |||| ||||||||||||||| |  |||||||  ||||||||||||||    
4390019 ttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaa 4390111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 228 - 450
Target Start/End: Original strand, 4377209 - 4377431
Alignment:
228 ccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtatt 327  Q
    |||| ||||||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||||||| ||||| || |  | |  |||||    
4377209 ccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaataagtcgtatt 4377308  T
328 gtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgca 427  Q
     ||||| |||| ||| |||||||||||||| ||||||||||||||||  |  ||||  |||  ||| | ||| ||||||||||||| |||||| |  |||    
4377309 atccgttacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccatcatatctgacgca 4377408  T
428 tcaatagacttcaaaaagaatgt 450  Q
    ||||  |||||||||||||||||    
4377409 tcaaccgacttcaaaaagaatgt 4377431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 200 - 624
Target Start/End: Original strand, 4384754 - 4385178
Alignment:
200 tgaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatct 299  Q
    |||| |||||| ||| ||||| | ||| |||| ||| ||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||    
4384754 tgaacaggtatcttcttctcataatcttccaacatcctctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatct 4384853  T
300 caccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagttt 399  Q
    ||||| ||||| || |  | |  ||||| ||||| |||| ||| |||||||||||||| ||||||||||||||||  |  ||||  |||  ||| | |||    
4384854 caccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaattt 4384953  T
400 gtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcg 499  Q
     |||| ||||||||||||||| |  |||||||  ||||| |||||||| || || ||   ||| ||||| |||||||| | |||  ||||  |||    |    
4384954 ctcagacgattccaacatatctgacgcatcaaccgactttaaaaagaacgtcccattcacactattcaccaacaagttcaatatactcctcttcttcttg 4385053  T
500 tcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaat 599  Q
    |||  | |||||||||||||||     || || |||  ||||||   | ||||||| ||||||||||||| |||   |||||||||||| ||| ||||||    
4385054 tcagtccatccatcaaccattacacaacaccccgttttcttccattgaactctatgatcttccaaagctttattcaccaacttaacttcttccctcaaat 4385153  T
600 atttccctctaatctcatcataaga 624  Q
    | |||||||||||||||||| ||||    
4385154 acttccctctaatctcatcaaaaga 4385178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 627
Target Start/End: Original strand, 4390224 - 4390294
Alignment:
557 tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg 627  Q
    |||||||||||||||||   |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||    
4390224 tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg 4390294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 4360034 - 4360099
Alignment:
2 tcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagtat 67  Q
    |||| |||| |||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||    
4360034 tccttggatttgaacattcttctcaaagctcctttgttctcatgaagacaacataaagttaagtat 4360099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 4414886 - 4414828
Alignment:
2 tcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagt 60  Q
    |||| ||||||||||||||||  ||||||||||| |||||| |||||||||| ||||||    
4414886 tccttggatgtgaacattcttctcaaagctccttcgttctcatgaatacaacctaaagt 4414828  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 627
Target Start/End: Original strand, 4377544 - 4377611
Alignment:
560 tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg 627  Q
    |||||||||| |||   |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||    
4377544 tccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg 4377611  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 15658753 - 15658720
Alignment:
341 tggacaacattttcttctccaacctcttcaacaa 374  Q
    |||||||||||||||||||||| |||||||||||    
15658753 tggacaacattttcttctccaatctcttcaacaa 15658720  T

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