View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3374_high_2 (Length: 555)
Name: NF3374_high_2
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 24722858 - 24722332
Alignment:
| Q |
11 |
cacagataaaagaatagaggagtttgcgaagactattactccctccgtctcatgttaagcgtcatatttcaaatacttgtttgtttaatattatttgtca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722858 |
cacagataaaagaatagaggagtttgcgaagactattactccctccgtctcatgttaagtctcatatttcaaatacttgtttgtttaatattatttgtca |
24722759 |
T |
|
| Q |
111 |
attttagaaaaactaaaacaaatacaaacctgttccatagcagcaccagaaagaatcaaatggcgttccccatttccaatacgtttgtgctttggaaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722758 |
attttagaaaaactaaaacaaatacaaacctgttccatagcagcaccagaaagaatcaaatggcgttccccatttccaatacgtttgtgctttggaaaca |
24722659 |
T |
|
| Q |
211 |
ccaaggccaagaggaagcatataaatcatcactccaggatctgttcctctttgaatgctgagtacaccattcgttaaggcacgctcataataatctgcgt |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722658 |
ccaaggccgagaggaagcatataaatcatcactccaggatctgttcctctttgaatgctgagtacaccattcgttaaggcacgctcataataatctgcgt |
24722559 |
T |
|
| Q |
311 |
aagtgactactttggtccatctgaacaggtgtcgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataaactaagaatcattcctg |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722558 |
aagtgacttctttggtccatctgaacaggtgccgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataaactaagaatcattcctg |
24722459 |
T |
|
| Q |
411 |
aatatccaatagtaaatcaaaaacacaatacgcatttttaacttccttagcattacatgatgaattaaaagaataatgagtgattgcttgtaccttcaac |
510 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722458 |
aatatcaaatagtaaatcaaaaacacaatacgcatttttaacttccgtagcattacatgatgaattaaaagaataatgagtgattgcttgtaccttcaac |
24722359 |
T |
|
| Q |
511 |
atattgtaagttgagcaagattcttcg |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
24722358 |
atattgtaagttgagcaagattcttcg |
24722332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 118 - 405
Target Start/End: Complemental strand, 24691988 - 24691701
Alignment:
| Q |
118 |
aaaaactaaaacaaatacaaacctgttccatagcagcaccagaaagaatcaaatggcgttcccca----tttccaatacgtttgtgctttggaaacacca |
213 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | |||| |||| ||||| ||||| ||| |
|
|
| T |
24691988 |
aaaacctaaaacaaatacctacctgttccgtagcagcaccagaaagtgtcaaatggatttccccaactatgtcca----gttttagctttcgaaacccca |
24691893 |
T |
|
| Q |
214 |
aggccaagaggaagcatataaatcatcactccaggatctgttcctctttgaatgctgagtacaccattcgttaaggcacgctcataataatctgcgtaag |
313 |
Q |
| |
|
| || | ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24691892 |
atacctaaaggaagcatataaatcatcacaccaggatctgttcctctttgaattccgagtacaccattcgttaaggcacgctcataataatctgcataag |
24691793 |
T |
|
| Q |
314 |
tgactactttggtccatctgaacaggtgtcgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataaactaagaatcat |
405 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24691792 |
tgacttctttggtccatctgaacaggtgccgtgaaacctgaaatcattatctggcaacataaatacttttacagaaataaactaagaatcat |
24691701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 199 - 416
Target Start/End: Complemental strand, 24731148 - 24730931
Alignment:
| Q |
199 |
gctttggaaacaccaaggccaagaggaagcatataaatcatcactccaggatctgttcctctttgaatgctgagtacaccattcgttaaggcacgctcat |
298 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
24731148 |
gctttggaaacaccaagacctagaggaagcatataaatcatcactccaggatctgttcctctttgaatactgagtacaccattcgttaaggcacgttcat |
24731049 |
T |
|
| Q |
299 |
aataatctgcgtaagtgactactttggtccatctgaacaggtgtcgcgaaacctg-aaatcattatctttcaacataaatacttcaacagaaataaacta |
397 |
Q |
| |
|
||||||||||||| | |||| |||| |||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
24731048 |
aataatctgcgtacgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattttcttgcaacataaatatttcaacag-aataaacta |
24730950 |
T |
|
| Q |
398 |
agaatcattcctgaatatc |
416 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
24730949 |
agaatcatctctgaatatc |
24730931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 536
Target Start/End: Complemental strand, 24691633 - 24691535
Alignment:
| Q |
438 |
atacgcatttttaacttccttagcattacatgatgaattaaaagaataatgagtgattgcttgtaccttcaacatattgtaagttgagcaagattcttc |
536 |
Q |
| |
|
|||||||||| |||||||| | | || |||||||||| ||| |||||| ||||||||| |||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
24691633 |
atacgcatttctaacttcccttggatgacatgatgaactaatcgaataaagagtgattggttgtaccttcaacatattataagttgtgcatgattcttc |
24691535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 536
Target Start/End: Complemental strand, 24730785 - 24730711
Alignment:
| Q |
462 |
attacatgatgaattaaaagaataatgagtgattgcttgtaccttcaacatattgtaagttgagcaagattcttc |
536 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
24730785 |
attacatgaagaactaaaagaatgacgagtgattgattgtaccttcaacatattgtaagttgtgcatgattcttc |
24730711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 24763740 - 24763711
Alignment:
| Q |
90 |
tttgtttaatattatttgtcaattttagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24763740 |
tttgtttaatattatttgtcaattttagaa |
24763711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University