View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3374_high_3 (Length: 427)
Name: NF3374_high_3
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 257 - 411
Target Start/End: Complemental strand, 371712 - 371557
Alignment:
| Q |
257 |
acaaaacaatggctgatgttgggaatttgttctgagatccctgaaagaggacggagactacaaccggcgctacatgaaattcgtcgattttgatgatgaa |
356 |
Q |
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| T |
371712 |
acaaaacaatggctg---ttgggaatttgttctgagatccctgaaagaggacggagactacaaccggcgctacatgaaattcgtcgattttgatgatgaa |
371616 |
T |
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| Q |
357 |
aat----gattttacagtggaaggcaactgcttgaaatctctctccgacgtctcaaaac |
411 |
Q |
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| T |
371615 |
aatgattgattatacagtggaaggcaactgcttgaaatctctctccgccgtctcaaaac |
371557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 371940 - 371885
Alignment:
| Q |
11 |
caaaggaaaaactcaattgagattataaaatctaaaaactctatgaacatttttgt |
66 |
Q |
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| T |
371940 |
caaaggaaaaactgaattgagattataaaatctaaaaactctaagagcatttttgt |
371885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 37770254 - 37770290
Alignment:
| Q |
12 |
aaaggaaaaactcaattgagattataaaatctaaaaa |
48 |
Q |
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| T |
37770254 |
aaaggaaaaactcaattcagattataaaatctaaaaa |
37770290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 513294 - 513384
Alignment:
| Q |
273 |
tgttgggaatttgttctgagatccctgaaagaggacggagactacaaccggcgctacatgaaattcgtcgattttgatgatgaaaatgatt |
363 |
Q |
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| T |
513294 |
tgttgggaatttgttctcagatccctcaaagaggacggagactacaaccgccgctacatcaaattcttcgattttgatgatgaaaatgatt |
513384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 512953 - 513055
Alignment:
| Q |
11 |
caaaggaaaaactcaattgagattataaaatctaaaaactctatgaacatttttgt--tnnnnnnntagggcgcgaaagaagatgatagggtggaaaaag |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
512953 |
caaaggaaaaactcaattcggattataaaatctaaaaactctatgaatatttttgtaaaaaaaaaataggacgcgaaagaagatgatagggtggaaaaag |
513052 |
T |
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| Q |
109 |
taa |
111 |
Q |
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||| |
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| T |
513053 |
taa |
513055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 512395 - 512446
Alignment:
| Q |
11 |
caaaggaaaaactcaattgagattataaaatctaaaaactctatgaacattt |
62 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
512395 |
caaaggaaaaactcaattcagattataaaatctaaaaactctatgaacattt |
512446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 513422 - 513456
Alignment:
| Q |
377 |
caactgcttgaaatctctctccgacgtctcaaaac |
411 |
Q |
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| T |
513422 |
caactgcttgaaatctctctccgccgtctcaaaac |
513456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 47769199 - 47769170
Alignment:
| Q |
85 |
aagaagatgatagggtggaaaaagtaataa |
114 |
Q |
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| T |
47769199 |
aagaagatgatagggtggaaaaagtaataa |
47769170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 42289660 - 42289623
Alignment:
| Q |
11 |
caaaggaaaaactcaattgagattataaaatctaaaaa |
48 |
Q |
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|||||||||||||||||| |||||||||||||| |||| |
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| T |
42289660 |
caaaggaaaaactcaattcagattataaaatctgaaaa |
42289623 |
T |
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