View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3374_high_5 (Length: 348)
Name: NF3374_high_5
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 35900546 - 35900288
Alignment:
| Q |
17 |
catctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataatgagcctaaaagatttgtactgctagccaaaagtagagttaattaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900546 |
catctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataatgagcctaaaagatttgtactgctagccaaaagtagagttaattaat |
35900447 |
T |
|
| Q |
117 |
gccaaatatgaccagaatctttctcccttggactagatgctttttacattgattttaaaaggtgtatatcataattaagaataatataaaaacagagaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35900446 |
gccaaatatgaccagaatctttctcccttggactagatgttttttacattgattttaaaaggtgtatatcatagttaagaataatataaaaacagagaac |
35900347 |
T |
|
| Q |
217 |
aaaaattcatgtacca-acgaccttgtactctggagccaaaacatttttcacaatgaca |
274 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900346 |
aaaaattcatgtaccagacgaccttgtactctggagccaaaacatttttcacaatgaca |
35900288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 339
Target Start/End: Complemental strand, 35882478 - 35882315
Alignment:
| Q |
173 |
aaaaggtgtatatcataattaagaataatataaaaacagagaacaaaaat-tcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatg |
271 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35882478 |
aaaaagtgtatatcctagctaagaataatataaaaacatagaacaaaaacatcatgtacca--gaccttgtactctggagcccaaacatttttcacaatg |
35882381 |
T |
|
| Q |
272 |
acagagtttaaatttgatgacacggtttagtgtgtagagctccccccatatcgctcattaattcatct |
339 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
35882380 |
acagagtttaaatctgatg--acggtgtagtgtgtagagctccccccatttcaatcattaattcatct |
35882315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 35882717 - 35882635
Alignment:
| Q |
92 |
ctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgctttttacattgattttaa |
174 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || ||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35882717 |
ctagccaaaagtagagctaattaacgccaaccataaccagaatcttcctcccttgaactagatgctttttagattgattttaa |
35882635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 35882861 - 35882821
Alignment:
| Q |
17 |
catctttagttcaagataaatcaaacaccgaaaacatcatc |
57 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
35882861 |
catctttagttcaagataaatcgaacagtgaaaacatcatc |
35882821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 10211850 - 10211953
Alignment:
| Q |
180 |
gtatatcataattaagaataatataaaaacagagaacaaaaa-ttcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatgacagagt |
278 |
Q |
| |
|
|||| ||||| || |||||||||||||| | |||||||||| |||| |||||| ||||||||||| | ||||||||||||||||||| |||||| ||| |
|
|
| T |
10211850 |
gtatgtcatagttgagaataatataaaagtacagaacaaaaacttcaggtacca--gaccttgtacttttgagccaaaacatttttcacgatgacaaagt |
10211947 |
T |
|
| Q |
279 |
ttaaat |
284 |
Q |
| |
|
| |||| |
|
|
| T |
10211948 |
tcaaat |
10211953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University