View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3374_high_7 (Length: 274)
Name: NF3374_high_7
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 32649506 - 32649258
Alignment:
| Q |
16 |
aataaaacaaagataatgaaaaatattcaaaatattcaaattaatcgtgtgacgtatt-ggggtatttaccattaggggagtaaaaaagcaaaccaaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32649506 |
aataaaacaaagataatgaaaaatattcaaaa---------taatcgtgtcacgtattgggggtatttaccattaggggagtaaaaaagcaaaccagaaa |
32649416 |
T |
|
| Q |
115 |
tttgatgagcatgaagttattgagtactccattaatagaaattataggagaaatccctcttttacttgtttagtggtattatatggaaaatataattag- |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32649415 |
tttgatgagcctgaagttattgagtactccattaatagaaatttcaggagaaatccctcttttacttgtttagtggtattatatggaaaatataattagt |
32649316 |
T |
|
| Q |
214 |
----nnnnnnnnnnnacaagtcaaaataaaatttaaattttcaccagtgattcatctc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32649315 |
tctttttttttttttacaagtcaaaataaaatttaaattttcaccggtgattcatctc |
32649258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 37135835 - 37135868
Alignment:
| Q |
134 |
ttgagtactccattaatagaaattataggagaaa |
167 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
37135835 |
ttgagtactccattaatagaaattgtaggagaaa |
37135868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University