View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3374_high_9 (Length: 260)
Name: NF3374_high_9
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 27274405 - 27274158
Alignment:
| Q |
13 |
aaaattccaagaacattcattatattcatgagtacttcggtataattctataacatcaaagttaaaacaaatatcacctaagtttaatatttaaattttc |
112 |
Q |
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| T |
27274405 |
aaaattccaagaacattcattatattcatgagtacttcggtataattctataacatcgaagttaaaacaaatatcacctaagtttaatatttaaattttc |
27274306 |
T |
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| Q |
113 |
acgtccatatatcttttatcttagcaccatatgtttcggcgcaaatgtagtaaaagaaaatatcccaccgcaaatcaagctcacgttttcaccctactat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27274305 |
acgtccatatatcttttatcttagcaccatatgtttcggcgcaaatgtagtaaaaaaaaatatcccaccgcaaatcaagctcacgttttcaccctactat |
27274206 |
T |
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| Q |
213 |
gacaggcaaacnnnnnnnnggttacattaaactgtgatgtgacagaga |
260 |
Q |
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| T |
27274205 |
gacaggcaaactcttttttggttacattaaactgtgatgtgacagaga |
27274158 |
T |
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