View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3374_low_4 (Length: 395)

Name: NF3374_low_4
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3374_low_4
NF3374_low_4
[»] chr1 (8 HSPs)
chr1 (20-389)||(28495863-28496232)
chr1 (262-381)||(36989348-36989467)
chr1 (263-381)||(12804511-12804629)
chr1 (263-389)||(42287117-42287243)
chr1 (263-389)||(4160377-4160503)
chr1 (263-378)||(12774948-12775063)
chr1 (261-339)||(31644056-31644134)
chr1 (263-389)||(50788819-50788945)
[»] chr8 (2 HSPs)
chr8 (263-389)||(5788723-5788849)
chr8 (323-381)||(33186743-33186801)
[»] chr7 (2 HSPs)
chr7 (263-387)||(40749392-40749516)
chr7 (281-389)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (260-389)||(42898298-42898427)
chr2 (261-389)||(40040789-40040917)
chr2 (263-389)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (261-389)||(22085504-22085632)
chr4 (263-336)||(30518148-30518221)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 28495863 - 28496232
Alignment:
Q  20 taatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcatta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495863 taatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcatta 28495962  T
Q  120 aattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgatttatcacag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28495963 aattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgatttatcacag 28496062  T
Q  220 aaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgttttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496063 aaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgttttt 28496162  T
Q  320 gtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcatctcac 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28496163 gtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 28496232  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 262 - 381
Target Start/End: Complemental strand, 36989467 - 36989348
Alignment:
Q  262 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 361  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  362 catttttcacatttccactt 381  Q
    || || ||||||||||||||    
T  36989367 cacttatcacatttccactt 36989348  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 12804511 - 12804629
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  363 atttttcacatttccactt 381  Q
    | |||||||||||||||||    
T  12804611 acttttcacatttccactt 12804629  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 42287243 - 42287117
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  363 atttttcacatttccacttcatctcac 389  Q
    |||||||||||||||||||| ||||||    
T  42287143 atttttcacatttccacttcttctcac 42287117  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 4160503 - 4160377
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  363 atttttcacatttccacttcatctcac 389  Q
    |||| ||||| ||||||||| ||||||    
T  4160403 atttctcacacttccacttcttctcac 4160377  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 12775063 - 12774948
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  363 atttttcacatttcca 378  Q
    | |||||||| |||||    
T  12774963 acttttcacacttcca 12774948  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 31644056 - 31644134
Alignment:
Q  261 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcaga 339  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  |||||||||||||||||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcaga 31644134  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 50788819 - 50788945
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  363 atttttcacatttccacttcatctcac 389  Q
    | || ||||| ||||| ||| ||||||    
T  50788919 acttatcacacttccatttcttctcac 50788945  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 5788723 - 5788849
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  363 atttttcacatttccacttcatctcac 389  Q
    | |||||||||||||||||| ||||||    
T  5788823 acttttcacatttccacttcttctcac 5788849  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 33186801 - 33186743
Alignment:
Q  323 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccactt 381  Q
    |||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactt 33186743  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 387
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  363 atttttcacatttccacttcatctc 387  Q
    | || ||||| ||||| ||| ||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 44150818 - 44150926
Alignment:
Q  281 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 380  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  381 tcatctcac 389  Q
    || ||||||    
T  44150918 tcttctcac 44150926  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 42898427 - 42898298
Alignment:
Q  260 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 359  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  360 aacatttttcacatttccacttcatctcac 389  Q
    | || || ||||||||||||||| ||||||    
T  42898327 agcacttgtcacatttccacttcttctcac 42898298  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 40040917 - 40040789
Alignment:
Q  261 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 360  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  361 acatttttcacatttccacttcatctcac 389  Q
    ||| || ||||| ||||||||| ||||||    
T  40040817 acacttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 38895857 - 38895983
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 362  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  363 atttttcacatttccacttcatctcac 389  Q
    | || ||||| ||||||||| ||||||    
T  38895957 acttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 389
Target Start/End: Original strand, 22085504 - 22085632
Alignment:
Q  261 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 360  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  361 acatttttcacatttccacttcatctcac 389  Q
    ||| |||||||| ||||||||| ||||||    
T  22085604 acacttttcacacttccacttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 30518148 - 30518221
Alignment:
Q  263 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatc 336  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatc 30518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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