View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3374_low_6 (Length: 291)
Name: NF3374_low_6
Description: NF3374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3374_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 43926394 - 43926672
Alignment:
| Q |
1 |
atttaatgttttaataaaaatgatctaataaaaaagacaagaaaatttccaaaccttaagccacttgtgggttgatctcttgaagccggtgcagaaaata |
100 |
Q |
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| T |
43926394 |
atttaatattttaataaaaatgatctaataaaaaagacaagaaaatttccaaaccttaagccacttgtgggttgatctcttgaagccggtgcagaaaata |
43926493 |
T |
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| Q |
101 |
atagagtcaaaagagtgtaattggccatttttgaagaggacattcttcccacttacgcattctatttccgctggtaaaacctaacgtaacacacaacaca |
200 |
Q |
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| T |
43926494 |
atagagtcaaaagagtgtaattggccatttttgaagaggacattcttcccacttacgcattctatttccgctggtaaaacctaacgtaacacacaacaca |
43926593 |
T |
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| Q |
201 |
atgtccattcgtcacgtcacaacaacaaacaaagctaccgcaattatatttttgcacttttcattcatgtactaactca |
279 |
Q |
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| T |
43926594 |
atgtccattcgtcacgtcacaacaacaaacaaagctaccgcaattatatttttgcacttttcattcatgtactaactca |
43926672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 43938351 - 43938409
Alignment:
| Q |
53 |
accttaagccacttgtgggttgatctcttgaagccggtgcagaaaataatagagtcaaa |
111 |
Q |
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| T |
43938351 |
accttaagccatttttgagttgatctcttgaaaccagtgcagaaaataatggagtcaaa |
43938409 |
T |
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