View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_10 (Length: 376)
Name: NF3375_high_10
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 2768529 - 2768174
Alignment:
| Q |
21 |
tttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaacaagtgcaggatccacccg |
120 |
Q |
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| T |
2768529 |
tttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaacaagtgcaggatccacctg |
2768430 |
T |
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| Q |
121 |
aggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgaggaaaataaaaactgttatct |
220 |
Q |
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| T |
2768429 |
tggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgaggaaaataaaaactgttatct |
2768330 |
T |
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| Q |
221 |
tcgttaactgatgttaacgtctttcttcagtttatcgtatgctttttaacacccgttgcatcaaagcattataacctataa-ggtataccatcctacttt |
319 |
Q |
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| T |
2768329 |
tcgttaactgatgttaacgtctttcttcagtttatcgtatgctttttaacacccgttgcatcaaagcattataacctataagggtataccatcctacttt |
2768230 |
T |
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| Q |
320 |
aacatatgtttggatgcgtggctgtaactttttcttgcatccctatgctactccac |
375 |
Q |
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| T |
2768229 |
agcatatgtttggatgcgtggctgtaactttttcttgcatccctatgctattccac |
2768174 |
T |
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