View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_12 (Length: 349)
Name: NF3375_high_12
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 129 - 334
Target Start/End: Complemental strand, 41619259 - 41619057
Alignment:
| Q |
129 |
cattcttcgttacttcatacttaatatattaacattttatttatagttctatgtggcagggatggtggtacttgtccgaggttcatgtgcggacctggta |
228 |
Q |
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| T |
41619259 |
cattcttcgttacttcatacttaatatattaacattttatttatagttctatgtggcagggatgat---acttgtccggggttcatgtgcggagctggta |
41619163 |
T |
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| Q |
229 |
gtattataccaaagtgtgtaggacgttattgtgagtgttagaatgatttcatatattacagagtacatgaccttattttgtattcaatgagctttcattt |
328 |
Q |
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| T |
41619162 |
gtattataccaaagtgtgtaggacgttattgtgagtgttagaacgatctcatatattacagagtatatgaccttattttgtattcaatgagctttcattt |
41619063 |
T |
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| Q |
329 |
acttat |
334 |
Q |
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|||||| |
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| T |
41619062 |
acttat |
41619057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 41621586 - 41621452
Alignment:
| Q |
21 |
gaacaaacatgaatccactaacaaaaaatgtttttgatatgatcatctttctttctccacttattgttacaatgagcactaaaggtaaaagaattttttc |
120 |
Q |
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| T |
41621586 |
gaacaaacatgactccaataacaaaaaatatttttgatatgatcatctttatttctccacttattgttacaatgagcatgagaggtaaaacaattttttc |
41621487 |
T |
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| Q |
121 |
cttttcaacattcttcgttacttcatacttaatat |
155 |
Q |
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| T |
41621486 |
cttttcaacatttttcgttacttcgtacttaatat |
41621452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 41621377 - 41621320
Alignment:
| Q |
243 |
tgtgtaggacgttattgtgagtgttagaatgatttcatatattacagagtacatgacc |
300 |
Q |
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| T |
41621377 |
tgtgtaggacgtttttgtgagtgttagaatgatttcatatatgacagagtacaagacc |
41621320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 41614270 - 41614222
Alignment:
| Q |
236 |
accaaagtgtgtaggacgttattgtgagtgttagaatgatttcatatat |
284 |
Q |
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| T |
41614270 |
accaaggtgtgtagaaggtgattgtgtgtgttagaatgatttcatatat |
41614222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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