View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_13 (Length: 339)
Name: NF3375_high_13
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 10980248 - 10980584
Alignment:
| Q |
1 |
ttagtttgacttgctactcaatagagataagcctctaaatttccgctatgatctgttaaaaaataa---ctaaatacttaggnnnnnnnngctgctgcat |
97 |
Q |
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| T |
10980248 |
ttagtttgacttgctactcaatagagataagcctctaaatttccgctatgatctgttaaaaaataataactaaatacttaggaaaaaaa-gctgctgcat |
10980346 |
T |
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| Q |
98 |
aggtattatagtttcattgaatgatgataaataacatcaaataactaaatcaaaaatagttctttaatttccttcatggcttcttcatcacagtgtccac |
197 |
Q |
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| T |
10980347 |
aggtattatagtttcattgaatgatgataaataacatcaaataactaaatcaaaaatagttctttaatttccttcatggcttcttcatcacagtgtccac |
10980446 |
T |
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| Q |
198 |
cctttgaattttctagcaaatactatcatgaaaatggaggtggatgtgtgagacaagcaagtttctttgaaggcaaacctgtgcttaatcaaggagttgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10980447 |
cctttgaattttctagcaaatactatcatgaaaatggaggtggatgtgtgagacaagcaagtttctttgaaggcaaacctgtgcttaatcaaggagttgg |
10980546 |
T |
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| Q |
298 |
atactctatcatccttggttttggtgctttctctgctc |
335 |
Q |
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| T |
10980547 |
atactctatcatccttggttttggtgctttctttgctc |
10980584 |
T |
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