View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_20 (Length: 286)
Name: NF3375_high_20
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 48056729 - 48056915
Alignment:
| Q |
17 |
agtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatcaatgaaaggaaagtacaagc |
116 |
Q |
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| T |
48056729 |
agtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatcaatgaaaggaaagtacaagc |
48056828 |
T |
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| Q |
117 |
acatcctgaacaaagataaaattttgaaatcaaaggatcacaatagcttggctagacacactacacagtacttacatcttttctgtc |
203 |
Q |
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| T |
48056829 |
acatcctgaacaaatataaaattttgaaatcaaaggatcacaatagcttggctagacacactacacagtacttacatcttttctgtc |
48056915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 48056944 - 48057013
Alignment:
| Q |
200 |
tgtcaatcttattaccaagaaccagaagctgaatcacatttaaagatgcttaacagatgatggagttcat |
269 |
Q |
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| T |
48056944 |
tgtcaatcttattaccaagaaccagaagctgaatcacatttaaagatgcttaacaaatgatggagttcat |
48057013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 48043511 - 48043591
Alignment:
| Q |
17 |
agtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca |
97 |
Q |
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| T |
48043511 |
agtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatca |
48043591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 48051488 - 48051619
Alignment:
| Q |
28 |
gagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctga- |
125 |
Q |
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| T |
48051488 |
gagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacacatcctgat |
48051587 |
T |
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| Q |
126 |
acaaagataaaattttgaaatcaaaggatcaca |
158 |
Q |
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| T |
48051588 |
taaaagctaaaa-tttgaaatcataggatcaca |
48051619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 48045418 - 48045460
Alignment:
| Q |
128 |
aaagataaaattttgaaatcaaaggatcacaatagcttggcta |
170 |
Q |
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| T |
48045418 |
aaagctaaaatttagaaatcaaaggatcacaatagcttggcta |
48045460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 48037467 - 48037523
Alignment:
| Q |
17 |
agtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtc |
73 |
Q |
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| T |
48037467 |
agtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtc |
48037523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 5317110 - 5317164
Alignment:
| Q |
17 |
agtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcag |
71 |
Q |
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| T |
5317110 |
agtttttgcatgagatcatgaagcaacaaacttctctatcagtaattgatttcag |
5317164 |
T |
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