View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_23 (Length: 265)
Name: NF3375_high_23
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 228480 - 228244
Alignment:
| Q |
18 |
aatttgatacttacttgattattctttcttagagttcaatgtgccnnnnnnnnngtcatttttattcctgttacctgtgattgcttttatattattgaaa |
117 |
Q |
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| T |
228480 |
aatttgatacttacttgattattctttcttagagttcaatgtgccaaaaaaat-gtcatttttattcctgttacctgtgattgcttttatattattgaaa |
228382 |
T |
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| Q |
118 |
ctgcatatgcattgctaggttttggttttttaggcttttcagagagtatgtatgccaatataactatacttcatccttgatgaagaactaataatgtatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
228381 |
ctgcatatgcattgctaggttttggttttttaggcttttcagagagtatgtatgccaatataactatacttcatccttgatgaagaactaattatgtatc |
228282 |
T |
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| Q |
218 |
ttgaacatgacacatgctttaacagtttagctttcatc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
228281 |
ttgaacatgacacatgctttaacagtttagctttcatc |
228244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 239327 - 239105
Alignment:
| Q |
29 |
tacttgattattctttcttagagttcaatgtgccnnnnnnnnngtcatttttattcctgttacctgtgattgcttttatattattgaaactgcatatgca |
128 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
239327 |
tacttgattattctttcttagagttcaatgtgccaaaataaatgtcatttttattcctgttaccagtgattgcttttatattattgaaactgcatatgca |
239228 |
T |
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| Q |
129 |
ttgctaggttttggttttttaggcttttcagagagtatgtatgccaatataactatacttcatccttgatgaagaactaataatgtatcttgaacatgac |
228 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
239227 |
ttgctagaatttggttttttaggcttttcagagagtatga----caatataactatacctcatcctggatgaagaactaataatgtatcttgaacatgac |
239132 |
T |
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| Q |
229 |
acatgctttaacagtttagctttcatc |
255 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
239131 |
acatgctttaacagtttagccttcatc |
239105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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