View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_25 (Length: 254)
Name: NF3375_high_25
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 13068257 - 13068034
Alignment:
| Q |
19 |
tgttattcatatgtcatatgtgctagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttctttaactc |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068257 |
tgttattcatatgtcatatgtactagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttctttaactc |
13068158 |
T |
|
| Q |
119 |
tctcttattacgaacaatttgttaatagcataaagacctcgaacattttcctatatcaaagatcataataaaactataaagttcctatttaagaaagagt |
218 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
13068157 |
tctcttattacgaacaatttgctaatagcataaggacctcgaacattttgctatatcaaagatcataataaaactctaaagttcctatttaagaaaaagt |
13068058 |
T |
|
| Q |
219 |
gtccttcaaccgaacaagtacctt |
242 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
13068057 |
gtccttcaaccgaacaagtacctt |
13068034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 12993608 - 12993383
Alignment:
| Q |
19 |
tgttattcatatgtcatatgtgctagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttctttaactc |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12993608 |
tgttattcatatgtcatatgtactagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttctttaactc |
12993509 |
T |
|
| Q |
119 |
tctct--tattacgaacaatttgttaatagcataaagacctcgaacattttcctatatcaaagatcataataaaactataaagttcctatttaagaaaga |
216 |
Q |
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||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12993508 |
tctctcttattacgaacaatttgctaatagcataaggacctcgaacattttgctatatcaaagatcataataaaactctaaagttcctatttaagaaaga |
12993409 |
T |
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| Q |
217 |
gtgtccttcaaccgaacaagtacctt |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12993408 |
gtgtccttcaaccgaacaagtacctt |
12993383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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