View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_29 (Length: 250)
Name: NF3375_high_29
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 39425099 - 39424869
Alignment:
| Q |
5 |
taagttgtttaatggctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaaccaccaactcttacatatattatacaaagtctatat |
104 |
Q |
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| T |
39425099 |
taagttatttagtggctataaatccaccttttttgatgaataagttaaatgtttgaagttcgaaccaccaactcctacatatattatacaaagtctatat |
39425000 |
T |
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| Q |
105 |
caaccgagctaaactc--aaaattaattctnnnnnnnnnnngttattaaactaactataattaccttatccatagatcaagaggaggaggcaatcatata |
202 |
Q |
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| T |
39424999 |
caaccgagctaaactcgtaggattaattctaaaaaaaat---ttattaaactaactataattaccttatccatggatcaagaggaggaggcaatca---- |
39424907 |
T |
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| Q |
203 |
gattatagatccaaatagtcaacatataatagttcatctca |
243 |
Q |
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| T |
39424906 |
---tatagatccaaatagtcaacatataatagttcatctca |
39424869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29321621 - 29321673
Alignment:
| Q |
17 |
tggctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaac |
69 |
Q |
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| T |
29321621 |
tggctagaaattcacttttttaaatgaataagtgaagtgattgaagttcgaac |
29321673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 30350595 - 30350565
Alignment:
| Q |
41 |
tgaataagtgaaatgtttgaagttcgaacca |
71 |
Q |
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| T |
30350595 |
tgaataagtgaaatgtttgaagttcgaacca |
30350565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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