View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_3 (Length: 726)
Name: NF3375_high_3
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 10 - 708
Target Start/End: Original strand, 1948588 - 1949285
Alignment:
| Q |
10 |
ccacagatacaccaaagaagaacacgatagaagaaacaacgtttaagcaagaaatcaagccttgtgagttgtgatctctcactaggacaaaacatgaacg |
109 |
Q |
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| T |
1948588 |
ccacagatacaccaaagaagaacacggtagaagaaacaacgtttaagaaagaaatcaagccttgtgagttgtgatctctcactaggacaaaacatgaacg |
1948687 |
T |
|
| Q |
110 |
acacaacgaaacacacagatgcagtcagagaatcactaataagcatggttagtgtgccaatagataatgcctgcacataataagtaagaattaaaagacc |
209 |
Q |
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| T |
1948688 |
acacaacgaaacacacagatgcattcagagaatcactaataagcatggttagtgtgccaatagataatgcctgcacataataagtaagaattaaaagacc |
1948787 |
T |
|
| Q |
210 |
gagtaaaacagcaaaccaataataactcatgtttattggcgtgagcacgtgtgacgtgatcaaaacatgaatgagtaatatatcgtgatcaaaacttgaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948788 |
gagtaaaacagcaaaccaataataactcatgtttattggcgtgagcacgtgtgacgtgatcaaaacatgaatgagtaatatatcgtgatcaaaacttgaa |
1948887 |
T |
|
| Q |
310 |
tgagtaatatatccttcctaatctagatgagataaattaaccacccttgcatttttcnnnnnnncaaagtaccaaggttgttatgagactaacaaagaca |
409 |
Q |
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| T |
1948888 |
tgagtaatatatccttcctaatctagatgagataaattaaccacccttgcatttttc-aaaaaacaaagtaccaaggttgttatgagactaacaaagaca |
1948986 |
T |
|
| Q |
410 |
ataattcacagaatgtcaggcaagttcagcatgaatctgtgcagccagcaagtaacaaaatacaagtagcacctacattgtattgtacaacaacaaaaag |
509 |
Q |
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| T |
1948987 |
ataattcacagaatgtcaggcaagttcagcatgaatctgtgcagccagcaagtaacaaaatacaagtagcacctacattgtattgtacaacaacaaaaag |
1949086 |
T |
|
| Q |
510 |
aaagcaggcgcctaaacgactaatgacacttaaccttgtcgtctgcaacaacattgagaattggtaagctattaaggaactcatcaagcccttcaaaaaa |
609 |
Q |
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| T |
1949087 |
aaagcaggcgcctaaacgactaatgacacttaaccttgtcgtctgcaacaacattgagaattggtaagctattaaggaactcatcaagcccttcaaaaaa |
1949186 |
T |
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| Q |
610 |
cccaatcccttcaatattatcttcagcattccctgtcccattcacgttcccttgtctcactccactagcagaagcttcttccacctcattgctgaactc |
708 |
Q |
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| T |
1949187 |
cccaatcccttcaatattatcttcagcattccctgtcccattcacgttcccttgtctcactccactagcagaagcttcttccacctcattgctgaactc |
1949285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 529 - 639
Target Start/End: Complemental strand, 37185152 - 37185042
Alignment:
| Q |
529 |
ctaatgacacttaaccttgtcgtctgcaacaacattgagaattggtaagctattaaggaactcatcaagcccttcaaaaaacccaatcccttcaatatta |
628 |
Q |
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|||||||| ||||||||| || ||| | || ||||||||| ||||||||| |||||||||||||||| || ||||||||||||| ||| ||||||||| |
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| T |
37185152 |
ctaatgacccttaaccttatcatctcccaccggattgagaatgggtaagctactaaggaactcatcaagaccctcaaaaaacccaaccccatcaatatta |
37185053 |
T |
|
| Q |
629 |
tcttcagcatt |
639 |
Q |
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|| |||||||| |
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| T |
37185052 |
tcctcagcatt |
37185042 |
T |
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