View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_30 (Length: 250)
Name: NF3375_high_30
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 35147573 - 35147335
Alignment:
| Q |
1 |
cgcataaaataatggattaaacgggttgtttagttgaattctaacaccttttgccaccttaaaaaggtacttaaattcgaagttttctaaaatgaaaggt |
100 |
Q |
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| T |
35147573 |
cgcataaaataatggattaaacaggttgtttagttgaattctaacaccttttgccaccttaaaaaggtacttaaattcgaagttttctaaaatgaaaggt |
35147474 |
T |
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| Q |
101 |
tctaaaatgaattgtgtgtactagtgaaatccgcctagctaggtcggcaagaagcaaacataagacagagcaaatgggactggcagatggcaaacgtctt |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35147473 |
tctaaaatgaattgtgt--actagtgaaatccgcctagctaggtcggcaagaagcaaacataagacagagcaaatgggactggcagatggcaaacgtctt |
35147376 |
T |
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| Q |
201 |
tggtggggacggaaataacaatatgatttcttcatattctt |
241 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35147375 |
tggtggggacggaaataacaatatgatttcttcattttctt |
35147335 |
T |
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