View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_32 (Length: 247)
Name: NF3375_high_32
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 11018847 - 11018590
Alignment:
| Q |
1 |
ctaaataggtattggttcaacaaaaaccaagaaaaacaatttgaatatcgta---------------gtcgaactagtactgatcaagcccatgtctcaa |
85 |
Q |
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| T |
11018847 |
ctaaataggtattggttcaacaaaaaccaagaaaaacaatttgaatatcgtatatttgtttatcgtagtcgaactagtactgatcaagcccatgtctcaa |
11018748 |
T |
|
| Q |
86 |
tcacgagaacatggagaattatgaacttctacttctaaaatcaaagccataattaattcatgtgaagagaaaacttacaattttaagttgaccaatcttt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11018747 |
ccacgagaacatggagaattatgaacttctacttctaaaatcaaagccataattaattcatgtgaagagaaaacttacaattttaagttgaccaatcttt |
11018648 |
T |
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| Q |
186 |
tcataatctggattttcattaccaaacacttgaaaagattcctcccttgcctttgctt |
243 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11018647 |
tcaaaatctggattttcattaccaaacacttgaaaagattcctcccttgcctttgctt |
11018590 |
T |
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