View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_4 (Length: 571)
Name: NF3375_high_4
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 280 - 552
Target Start/End: Original strand, 39776299 - 39776571
Alignment:
| Q |
280 |
tacacggaaaaagaaccgatataaaaaagatccttatcctcggcgcaggaccaattgtaataggtcaagcatgcgaattcgattactcaggaacacaagc |
379 |
Q |
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| T |
39776299 |
tacacggaaaaagaaccgatataaaaaagatccttatcctcggcgcaggaccaattgtaataggtcaagcatgcgaattcgattactcaggaacacaagc |
39776398 |
T |
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| Q |
380 |
atgcaaagcattacgcgaagaaggttacgaagttattctcataaactcaaatccagcaacaatcatgacagatccagaaaccgctgatagaacttatatc |
479 |
Q |
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| T |
39776399 |
atgcaaagcattacgcgaagaaggttacgaagttattctaataaactcaaatccagcaacaatcatgacagatccagaaactgctgatagaacttatatc |
39776498 |
T |
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| Q |
480 |
acacccatgactcctgaattagtcgaacaagttctcgaatccgaacgccccgacgcacttctcccgaccatgg |
552 |
Q |
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| T |
39776499 |
acacccatgactcctgaattagtcgaacaggttctcgaatccgaacgccccgacgcacttctcccgaccatgg |
39776571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 43093892 - 43094062
Alignment:
| Q |
1 |
gaagaaagagaaaataaataacctggttttggtttttcctcctaatggggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatata |
100 |
Q |
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| T |
43093892 |
gaagaaagagaaaataaataacctggttttggtttttcctcctaatggggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatata |
43093991 |
T |
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| Q |
101 |
aaatgaacaatcttcagcttcaggcctcaaagggaattgatgagttccatcactgcttttctcttccttct |
171 |
Q |
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| T |
43093992 |
aaatgaacaatcttcagcttcaggcctcaaagggaattgatgagttccatcactgcttttctcttccttct |
43094062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 34207379 - 34207461
Alignment:
| Q |
48 |
gggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatataaaatgaacaatcttcagcttcaggcctcaa |
130 |
Q |
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| T |
34207379 |
gggtgattaaacttgcaattgaatccaaatttgcaagttccagtcttgagataaaaagaacagtcttcagcttcaggcctcaa |
34207461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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