View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_high_48 (Length: 207)
Name: NF3375_high_48
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 40472722 - 40472552
Alignment:
| Q |
21 |
atcctcacctctctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaac |
120 |
Q |
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| T |
40472722 |
atcctcacctctctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaac |
40472623 |
T |
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| Q |
121 |
atcttccaaaagaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
191 |
Q |
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| T |
40472622 |
atcttccaaaagagttttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
40472552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 40466375 - 40466216
Alignment:
| Q |
32 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
131 |
Q |
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| T |
40466375 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
40466276 |
T |
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| Q |
132 |
gaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
191 |
Q |
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| T |
40466275 |
gagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
40466216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 40489357 - 40489198
Alignment:
| Q |
32 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
131 |
Q |
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| T |
40489357 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
40489258 |
T |
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| Q |
132 |
gaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
191 |
Q |
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| T |
40489257 |
gagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
40489198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 40480464 - 40480380
Alignment:
| Q |
54 |
aaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaagaatttt |
138 |
Q |
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||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||| || ||||||||||| |||||| |||| |
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| T |
40480464 |
aaaataattcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattgtcaacatcttctaaaagagtttt |
40480380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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