View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_1 (Length: 844)
Name: NF3375_low_1
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 625; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 183 - 834
Target Start/End: Complemental strand, 34320504 - 34319850
Alignment:
| Q |
183 |
gggtcatgctatagtcacatgttaatgagttactcattttgaaagactaatcaaaactatctacatcagagacagagtttcctatttgaagctaaaaggg |
282 |
Q |
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| T |
34320504 |
gggtcatgctataatcacatgttaatgagttactcattttgaaagactaatcaaaactatctacatcagagacagagtttcctatttgaagctaaaaggg |
34320405 |
T |
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| Q |
283 |
tccattcaaatgtacactaaaaagcaaacagaatcgtttggctttggaaatcatgtcttacacaaggaacagataaaaagcaaaatgtggcctcaaattt |
382 |
Q |
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| T |
34320404 |
tccattcaaatgtacactaaaaagcaaacagaatcgtttggctttggaaatcatgtcttacacaaggaacagataaaaagcaaaatgtggcctcaaattt |
34320305 |
T |
|
| Q |
383 |
tctggcctaggcaatatcagggctggatgccctcagacatgattattcttacaattcctagcttttataatatgcatgatatggagataaatttaattta |
482 |
Q |
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| T |
34320304 |
tctggccttggcaatatcagggctggatgccttcagacatgattattattacaattcctagcttttataatatgcatgatatggagataaatttaattta |
34320205 |
T |
|
| Q |
483 |
aaaaagttatcaatgtctaatcttatctttgattttcaatggatagttataagtatagtgggattaaacttgactacttgagtgtgacggtggtgattaa |
582 |
Q |
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| T |
34320204 |
aaaaagttatcaatgtctaatcttatctttgattttcaatggatagttataagtatagtgggattaaacttgactacttgagtgtgacggtggtgattaa |
34320105 |
T |
|
| Q |
583 |
tcaattatttgcacactttatctgttaccataacatgcacgttttacactattgcagatgatctagttat---gtagaagaaaagtaaaggggacaaaat |
679 |
Q |
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| T |
34320104 |
tcaattatttgcacactttatctgttaccataacatgcacgttttacactattgcagatgatctagttatggagtagaagaaaagtaaaggggacaaaat |
34320005 |
T |
|
| Q |
680 |
aggtttagactagcctgcttcaagaccaaagggttatgtacaaatgggtctgccccaatgaagttagaaaattgttcatctttaaatacccctttgtttg |
779 |
Q |
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| T |
34320004 |
aggtttagactagcctgcttcaagaccaaagggttatgtacaaatgggtctgccccaatgaagttagaaaattgttcatctttaaatacccctttgtttg |
34319905 |
T |
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| Q |
780 |
tgtgtgtgtcatgtacaaatgtattaagtggtctttgaatacacgtttgtctgtg |
834 |
Q |
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| T |
34319904 |
tgtgtgtgtcatgtacaaatgtattaagtggtctttgaatacacgtttgtctgtg |
34319850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 34320667 - 34320565
Alignment:
| Q |
18 |
aattcatcatgtcgagagatatcagtcacctctactaaacagatttaactcctctaaaataacatgttagtaaagtaagaaaataatagctaatattcca |
117 |
Q |
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| T |
34320667 |
aattcatcatgtcgaga--tatcagtcacctctactaaacagatttaactcctctaaaataacatgttagtaaagtaagaaaataatagctaatattcca |
34320570 |
T |
|
| Q |
118 |
gtctc |
122 |
Q |
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||||| |
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| T |
34320569 |
gtctc |
34320565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 753
Target Start/End: Original strand, 34319666 - 34319695
Alignment:
| Q |
724 |
tgggtctgccccaatgaagttagaaaattg |
753 |
Q |
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| T |
34319666 |
tgggtctgccccaatgaagttagaaaattg |
34319695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 784 - 821
Target Start/End: Complemental strand, 41730703 - 41730666
Alignment:
| Q |
784 |
tgtgtcatgtacaaatgtattaagtggtctttgaatac |
821 |
Q |
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| T |
41730703 |
tgtgttatgtacaaatgcattaagtggtctttgaatac |
41730666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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