View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_12 (Length: 373)
Name: NF3375_low_12
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 5110981 - 5111301
Alignment:
| Q |
23 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcat |
122 |
Q |
| |
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| T |
5110981 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcat |
5111080 |
T |
|
| Q |
123 |
tgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
222 |
Q |
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|| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111081 |
tggatcttaataacatggaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
5111180 |
T |
|
| Q |
223 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggataggggactta |
322 |
Q |
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| T |
5111181 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtgacaatgattttgttggagaaattccttcaaggataggggactta |
5111280 |
T |
|
| Q |
323 |
tctaaacttcaacagttggat |
343 |
Q |
| |
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| |||||||| || |||||| |
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| T |
5111281 |
gcaaaacttcatcatttggat |
5111301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 5084098 - 5083767
Alignment:
| Q |
15 |
cttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
114 |
Q |
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| T |
5084098 |
cttatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
5083999 |
T |
|
| Q |
115 |
aaatgcattgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagt |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||| |
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| T |
5083998 |
aaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattgggaaatctctctttccttgtatttcttgatctacaaggaaatagt |
5083899 |
T |
|
| Q |
215 |
ttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggatag |
314 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
5083898 |
ttccatggtgagttaccacatgagttacttcagttgaagagattgaaattgttgaatttgagcaacaatgattttgttggagaaattccttcaaggatag |
5083799 |
T |
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| Q |
315 |
gggacttatctaaacttcaacagttggatatt |
346 |
Q |
| |
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|||||||||| ||||||||||| ||||||||| |
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| T |
5083798 |
gggacttatcaaaacttcaacaattggatatt |
5083767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 5093978 - 5094316
Alignment:
| Q |
23 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcat |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5093978 |
attcttagtaattggtcaatttcctcttctacttcttctttgtcttcatgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcat |
5094077 |
T |
|
| Q |
123 |
tgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
5094078 |
tgaatcttagtagcatgggccttgaaggtacaatttctcctcaattgggaaatctttctttccttattgttcttgatttacagggcaatagtttccatgg |
5094177 |
T |
|
| Q |
223 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggataggggactta |
322 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||||| |||| |||| ||| ||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
5094178 |
tgagttaccacatgagttgcttcagttgaaaagattgaaattgttgaatttaagcaacaatgattttgttggagaaattccttcaaggataggggagtta |
5094277 |
T |
|
| Q |
323 |
tctaaacttcaacagttggatattggttataataatatt |
361 |
Q |
| |
|
|| ||||||||||| ||||||||| | |||||||||||| |
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| T |
5094278 |
tcaaaacttcaacaattggatattagctataataatatt |
5094316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 14427880 - 14427589
Alignment:
| Q |
15 |
cttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
114 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14427880 |
cttatcatattcttagtaattggtcaatttccacttctgcttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
14427781 |
T |
|
| Q |
115 |
aaatgcattgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
14427780 |
aaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattaggaaatctctctttccttgttgttcttgatctacatggcaatagt |
14427681 |
T |
|
| Q |
215 |
ttctatggtgagttaccacatgagttacttcagttg---aagagattgaaatggttggatttgagcgacaataattttgttggagaaattcc |
303 |
Q |
| |
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||| ||||||||||||||||||||||| |||| ||| || ||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
14427680 |
ttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatgttggatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 16873359 - 16873519
Alignment:
| Q |
144 |
ttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
243 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
244 |
tcagttgaagagattgaaatggttggatttgagcgacaataattttgttggagaaattcct |
304 |
Q |
| |
|
||| || ||||| |||| | || || |||||| ||||| |||||||||||||||||||| |
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|
| T |
16873459 |
tcatctgcagagactgaagagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 16872435 - 16872553
Alignment:
| Q |
31 |
taattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatctt |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
16872435 |
taattggtcaatctcctcttctacttctt---tctcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatctt |
16872531 |
T |
|
| Q |
131 |
agtaacatgggccttgaaggta |
152 |
Q |
| |
|
||||| ||||| |||||||||| |
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|
| T |
16872532 |
agtaatatgggacttgaaggta |
16872553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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