View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_18 (Length: 309)
Name: NF3375_low_18
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 2592148 - 2591872
Alignment:
| Q |
18 |
attgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatg |
117 |
Q |
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| T |
2592148 |
attgttggaagtcctgcttcaagcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatg |
2592049 |
T |
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| Q |
118 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcgtagggtttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2592048 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtgaaaaatctgttcctaatggtttccaatgttcatagagtttcat |
2591949 |
T |
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| Q |
218 |
cttcatgtgaaaggttc-aagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttg |
293 |
Q |
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| T |
2591948 |
cttcatgtgaaaggttcaaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttg |
2591872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 2578399 - 2578135
Alignment:
| Q |
18 |
attgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2578399 |
attgttggaagtcctgcttcaagcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaacg |
2578300 |
T |
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| Q |
118 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcgtagggtttcat |
217 |
Q |
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| T |
2578299 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcatagagt----- |
2578205 |
T |
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| Q |
218 |
cttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttactt |
289 |
Q |
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||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2578204 |
-ttcatgtgaaaggttcaagccataccaatacttatgttac-aatactttcattatcgtttttattttactt |
2578135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 2599902 - 2599637
Alignment:
| Q |
18 |
attgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatg |
117 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2599902 |
attgttggaattcctgcttcaagcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaacg |
2599803 |
T |
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| Q |
118 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcgtagggtttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
2599802 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcatagagt----- |
2599708 |
T |
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| Q |
218 |
cttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttactt |
289 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2599707 |
-ttcatgtgaaaggttcaagccataccaatacttatgttactactactttcattgttgtttttattttactt |
2599637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 2608438 - 2608202
Alignment:
| Q |
18 |
attgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatg |
117 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| |||||||| |||||||||||||||| |
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| T |
2608438 |
attgttggaagtcctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttgtactgctattaaggctaatg |
2608339 |
T |
|
| Q |
118 |
ttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgttcgtagggtttcat |
217 |
Q |
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|||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| | |
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| T |
2608338 |
ttcttggtatcaacttgaatgttcctatcacactcagtctcctacttagtgcttgtgaaaaatctgttccttcaggtttccaatgttcatag------ac |
2608245 |
T |
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| Q |
218 |
cttcatgtgaaaggttcaagccatacgagtacttatgttacta |
260 |
Q |
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||||||| |||||||||| |||||| | |||||||||||||| |
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| T |
2608244 |
tttcatgtcaaaggttcaaaccatactaatacttatgttacta |
2608202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 49329072 - 49329233
Alignment:
| Q |
42 |
aaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgc |
141 |
Q |
| |
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||||||||| |||||||| | ||||||||||||||||| || ||| |||||||||| || || |||||||||| || ||||| |||||| ||||||||| |
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| T |
49329072 |
aaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcacttaaggctaacgtgcttgggatcaacctgaatgtgc |
49329171 |
T |
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| Q |
142 |
ctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgt |
203 |
Q |
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|| |||| || || | || |||||||| ||||||||| | || ||| ||||||||||||| |
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| T |
49329172 |
ctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
49329233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 49331367 - 49331442
Alignment:
| Q |
61 |
aaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatgttcttggtatcaacttgaa |
136 |
Q |
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||||||||||||||||||| || ||| |||||||||| || || |||||||| ||||| ||||| || |||||||| |
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| T |
49331367 |
aaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
49331442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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