View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_19 (Length: 305)
Name: NF3375_low_19
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 46212742 - 46212874
Alignment:
| Q |
18 |
agatcaaatgattaagagactcttgagaatttgtggttaatttaatttatgtataaaaagttttacattggtatatgtgaatgaaatctttaatcaatat |
117 |
Q |
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| T |
46212742 |
agatgaaatgattaagagactcttgagaatttgtggttaatttaatttatgtataaaaagttttacattggtatatgtgaatgaaatctttaatcaatat |
46212841 |
T |
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| Q |
118 |
aaataattttacaaatgtatctagtcacatcat |
150 |
Q |
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| T |
46212842 |
aaataattttacaaatgtatctagtcacatcat |
46212874 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 46212940 - 46213011
Alignment:
| Q |
217 |
ttgacataataattggttgtatctgcaaaagttttgtatattaataattcaaaagaaattaaatcctaaaaga |
289 |
Q |
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| T |
46212940 |
ttgacataataattggttgtatctgcaaaagttttgtatattaataattc-aaagaaattaaatcctaaaaga |
46213011 |
T |
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