View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3375_low_2 (Length: 844)

Name: NF3375_low_2
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3375_low_2
NF3375_low_2
[»] chr1 (17 HSPs)
chr1 (539-834)||(35507859-35508155)
chr1 (18-322)||(35508365-35508672)
chr1 (159-291)||(30529360-30529492)
chr1 (186-329)||(14758527-14758670)
chr1 (195-329)||(44920186-44920320)
chr1 (152-304)||(51681633-51681782)
chr1 (179-257)||(46729212-46729290)
chr1 (186-258)||(36564488-36564560)
chr1 (188-251)||(18038939-18039002)
chr1 (198-329)||(13792004-13792135)
chr1 (200-302)||(41649881-41649983)
chr1 (420-472)||(35508222-35508269)
chr1 (182-250)||(49338119-49338187)
chr1 (170-221)||(40064871-40064922)
chr1 (183-217)||(8463183-8463217)
chr1 (149-226)||(3982336-3982413)
chr1 (197-250)||(44584056-44584109)
[»] scaffold0027 (1 HSPs)
scaffold0027 (153-304)||(122427-122578)
[»] chr5 (7 HSPs)
chr5 (155-329)||(248425-248600)
chr5 (152-329)||(20125615-20125790)
chr5 (186-258)||(16980777-16980849)
chr5 (181-302)||(42877239-42877360)
chr5 (186-252)||(15206490-15206556)
chr5 (201-255)||(25437884-25437938)
chr5 (158-223)||(29558275-29558340)
[»] chr4 (16 HSPs)
chr4 (181-256)||(34469557-34469632)
chr4 (147-258)||(38949015-38949126)
chr4 (219-327)||(31655473-31655581)
chr4 (155-317)||(39804851-39805013)
chr4 (181-258)||(38380497-38380574)
chr4 (219-299)||(23133076-23133156)
chr4 (266-329)||(50131028-50131091)
chr4 (156-303)||(19652627-19652774)
chr4 (188-248)||(7388824-7388884)
chr4 (152-252)||(10097272-10097372)
chr4 (195-258)||(49011887-49011950)
chr4 (184-258)||(55855187-55855258)
chr4 (159-250)||(24546676-24546767)
chr4 (195-258)||(32893050-32893113)
chr4 (201-255)||(2063517-2063571)
chr4 (270-320)||(17126765-17126814)
[»] chr8 (13 HSPs)
chr8 (182-322)||(14237101-14237243)
chr8 (182-329)||(20142430-20142577)
chr8 (195-302)||(33285929-33286036)
chr8 (186-301)||(43238136-43238251)
chr8 (186-302)||(14855579-14855695)
chr8 (183-250)||(24457874-24457941)
chr8 (157-240)||(25601411-25601494)
chr8 (150-221)||(43631282-43631352)
chr8 (200-329)||(31264965-31265094)
chr8 (181-251)||(6904214-6904284)
chr8 (181-251)||(12787894-12787964)
chr8 (200-250)||(25279975-25280025)
chr8 (188-241)||(11078116-11078169)
[»] chr7 (8 HSPs)
chr7 (156-299)||(26200-26342)
chr7 (182-329)||(44319846-44319993)
chr7 (186-321)||(6771813-6771948)
chr7 (197-329)||(6775199-6775331)
chr7 (183-229)||(13040286-13040332)
chr7 (212-301)||(5495991-5496080)
chr7 (186-224)||(2959569-2959607)
chr7 (189-250)||(41898301-41898362)
[»] chr2 (9 HSPs)
chr2 (195-322)||(18734327-18734454)
chr2 (177-258)||(32438068-32438149)
chr2 (181-302)||(33962933-33963054)
chr2 (195-257)||(7933334-7933396)
chr2 (176-253)||(37597532-37597609)
chr2 (154-230)||(26271437-26271513)
chr2 (201-250)||(18684409-18684458)
chr2 (181-239)||(33067709-33067768)
chr2 (210-255)||(32859827-32859872)
[»] chr3 (13 HSPs)
chr3 (195-327)||(3973783-3973915)
chr3 (195-327)||(3995962-3996094)
chr3 (200-327)||(4009495-4009622)
chr3 (195-257)||(32606386-32606448)
chr3 (154-297)||(49682167-49682310)
chr3 (197-291)||(21813162-21813256)
chr3 (186-258)||(39145007-39145078)
chr3 (186-317)||(34285330-34285457)
chr3 (181-235)||(40629154-40629208)
chr3 (176-251)||(29212746-29212821)
chr3 (200-255)||(54290786-54290841)
chr3 (201-255)||(43804011-43804065)
chr3 (186-227)||(48811363-48811404)
[»] chr6 (3 HSPs)
chr6 (186-301)||(29988324-29988437)
chr6 (181-240)||(31556746-31556805)
chr6 (186-236)||(3441023-3441073)
[»] scaffold0633 (1 HSPs)
scaffold0633 (200-302)||(5013-5115)
[»] scaffold0036 (1 HSPs)
scaffold0036 (269-322)||(21276-21329)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 539 - 834
Target Start/End: Complemental strand, 35508155 - 35507859
Alignment:
Q  539 ccaattatttttaacgtgattctgg----gaagttaattaagtttataatataatacctagtttagagtggtgagcaaggaagtggaagtaatagcgccg 634  Q
    ||||||||||||| |||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35508155 ccaattatttttatcgtgattctggctgggaagttaattaagtttatactataatacctagtttagagtggtgagcaaggaagtggaagtaatagcgccg 35508056  T
Q  635 tgtttggttataaccagaataatcagaatcagaaattcagaaacacgatgagaagatacaacaannnnnnnnnnnnnnnnnnaaattctggaaattatcg 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||    
T  35508055 tgtttggttataaccagaataatcagaatcagaaattcagaaacacgatgagaagatacaacaa---ttcttcttcttcttcaaattctggaaattatcg 35507959  T
Q  735 gaatccatgtattactatgcaccaaccttgggcttctcttctcgtttatggcatcaaacgcatcgaaggcaggtcatggccttctcccatcacaggttct 834  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  35507958 gaatccatgtattactatgcaccaaccttgggcttctcttctcgtttatggcatcaaacgcatcgaaggcagatcatggccttctcccatcaaaggttct 35507859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 35508672 - 35508365
Alignment:
Q  18 catatctcattgttatataagggtagttatgtcatttacaaaatatagattttcctcctctcactttattcataccaaacaatcaccttaatttccaccc 117  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35508672 catatctctttgttatataaggatagttacgtcatttacaaaatatagattttcctcctctcactttattcataccaaacaatcaccttaatttccagcc 35508573  T
Q  118 acattatatcaattttccttctt--acattattttttaaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaattttta 215  Q
    ||||||||||||||||| |||||  || |||||||||||||| |||||||||||| || |||| | |||||||||||| |||||||||||||||||||||    
T  35508572 acattatatcaattttcattcttcaacgttattttttaaaggaaaatgataacgagtgccttttatgcattctttaaagactttaaataataaattttta 35508473  T
Q  216 tgaaaaattgtgcattt-aatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgccatcagggcac 314  Q
    ||| ||||||| ||||| ||| ||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35508472 tgagaaattgtacatttaaatgcattggaaattgaagtgttaaattttttcaaagaataatttcttaattgagaaaccataaagagtgtcatcagggcac 35508373  T
Q  315 tcgttaac 322  Q
    ||||||||    
T  35508372 tcgttaac 35508365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 30529492 - 30529360
Alignment:
Q  159 aaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    ||||| |||||| ||  |||||| ||||||||||  |||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  30529492 aaatgttaacgagtgcttttaagacattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaa 30529393  T
Q  259 nnnnnnnaaagaataatttcttaattgagaaac 291  Q
           ||||||||||||||||||||| ||||    
T  30529392 ttttttcaaagaataatttcttaattgaaaaac 30529360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 14758670 - 14758527
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattg 285  Q
    |||||||  |||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||| |||||||       || |||||||||||||||||    
T  14758670 tctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg 14758571  T
Q  286 agaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
      ||||  ||||||||||| | ||| ||||||||||| ||||||    
T  14758570 gaaaactttaaagagtgcccttaggacactcgttaacaagaccc 14758527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 195 - 329
Target Start/End: Complemental strand, 44920320 - 44920186
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccat 294  Q
    |||| ||||| |||||||||||| ||||||||||||| ||| ||||  ||||||||||||||||       || |||||||||||||||||||||||| |    
T  44920320 acttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaacttttttaatgaataatttcttaattgagaaacctt 44920221  T
Q  295 aaagagtgccatcagggcactcgttaacgagaccc 329  Q
    ||||| |||| | |   ||||||||||| ||||||    
T  44920220 aaagaatgcccttaaaacactcgttaacaagaccc 44920186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 304
Target Start/End: Complemental strand, 51681782 - 51681633
Alignment:
Q  152 taaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||||| ||||| |||||| ||| | ||||||| | ||||| |||| ||||||||||||||  ||| |||||||| |||| ||| || |||||||| |||    
T  51681782 taaaggaaaatgttaacgagtgt-tctaaggcactttttaagaactctaaataataaattt--atggaaaattgtacattcaatgcaccggaaattaaag 51681686  T
Q  252 tgttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgcc 304  Q
    |||||||       |||||||||||||||||||| |||||| |||||||||||    
T  51681685 tgttaaactttttcaaagaataatttcttaattgggaaaccttaaagagtgcc 51681633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 46729290 - 46729212
Alignment:
Q  179 aaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaa 257  Q
    |||||| |||||||  |||||||||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  46729290 aaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaagtgttaa 46729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 36564488 - 36564560
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||  |||||||||| |||| ||||||||||||||||||||| ||| | |  |||||||||||||||||    
T  36564488 tctttaaggactttaaatagtaaaattttatgaaaaattgtgcattcaatgctttagaaattgaagtgttaaa 36564560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 18039002 - 18038939
Alignment:
Q  188 tttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||||| |||||| ||||||| |||||||||||| ||||| ||| ||| |||||||||||||||    
T  18039002 tttaaagactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaag 18038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 13792004 - 13792135
Alignment:
Q  198 ttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaa 297  Q
    ||||||| ||||||||||| | |||||||||||| ||| ||||   |||||||||||||||       ||| |||||||| |||||| | ||||| ||||    
T  13792004 ttaaatagtaaatttttataagaaattgtgcattaaatgcatcaataattgaagtgttaaactttttaaaaaaataattttttaattaaaaaaccttaaa 13792103  T
Q  298 gagtgccatcagggcactcgttaacgagaccc 329  Q
    ||||| | | ||| ||||||||| | ||||||    
T  13792104 gagtgtcttaaggacactcgttagcaagaccc 13792135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 41649983 - 41649881
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    ||||| |||||||||||| |||||| |||||| ||| ||| |||||||||| |||||||       || ||||||||| ||||||| |||||| |||| |    
T  41649983 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 41649884  T
Q  300 gtg 302  Q
    |||    
T  41649883 gtg 41649881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 35508269 - 35508222
Alignment:
Q  420 agcgaaggcccactaggttaaaaaccctataactactagagagaaaggctcag 472  Q
    |||||||||||||||||||||||||||     |||||||||||||||||||||    
T  35508269 agcgaaggcccactaggttaaaaaccc-----ctactagagagaaaggctcag 35508222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 49338187 - 49338119
Alignment:
Q  182 gcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    |||||||||||| | |||| ||| |||||||||||||||| |||| ||||| ||| |||| ||||||||    
T  49338187 gcattctttaaagaatttagatagtaaatttttatgaaaatttgtccattttatatatcgaaaattgaa 49338119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 40064871 - 40064922
Alignment:
Q  170 aatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaa 221  Q
    ||||||| | || |||||||||| |||||||||| |||||||||||||||||    
T  40064871 aatgtctctgagacattctttaagaactttaaatgataaatttttatgaaaa 40064922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 8463217 - 8463183
Alignment:
Q  183 cattctttaaaaactttaaataataaatttttatg 217  Q
    |||||||||||||||||||||| ||||||||||||    
T  8463217 cattctttaaaaactttaaatagtaaatttttatg 8463183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 3982413 - 3982336
Alignment:
Q  149 ttttaaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgt 226  Q
    ||||||||||||||| |||||| |||||     ||| |||||||| |||||||||| ||||||||||| |||| ||||    
T  3982413 ttttaaagggaaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaaatttttattaaaagttgt 3982336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 44584056 - 44584109
Alignment:
Q  197 tttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    |||| ||| ||| |||||||||||| ||||||||||||||||| | ||||||||    
T  44584056 tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaa 44584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 153 - 304
Target Start/End: Original strand, 122427 - 122578
Alignment:
Q  153 aaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagt 252  Q
    ||||||||||| |||||| || ||||| ||||||||||||  | ||||| || ||| |||||||| ||||||||||||||||| ||||||||||| ||||    
T  122427 aaagggaaatgttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagt 122526  T
Q  253 gttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgcc 304  Q
    ||||||       ||||||||||||||||||||||||| | |||||||||||    
T  122527 gttaaactttttcaaagaataatttcttaattgagaaatcttaaagagtgcc 122578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 155 - 329
Target Start/End: Original strand, 248425 - 248600
Alignment:
Q  155 agggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgt 254  Q
    ||||||||| |||| | || ||| | |||| |||||||  |||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  248425 agggaaatgttaactagtgccttaagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgt 248524  T
Q  255 taaannnnnnnaaag-aataatttcttaattgagaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
    ||||       |||| ||||||||||||||||||||||| ||||||||||| | | | ||||||||||| ||||||    
T  248525 taaacttttttaaagaaataatttcttaattgagaaaccttaaagagtgcccttaagacactcgttaacaagaccc 248600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 152 - 329
Target Start/End: Original strand, 20125615 - 20125790
Alignment:
Q  152 taaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||||| |||||  ||||| || | |||||| ||| |||||  |||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||    
T  20125615 taaaggaaaatgtcaacgagtgaccttaaggaattttttaaggactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaag 20125714  T
Q  252 tgttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
    |||||||       ||||||||| ||||||||||| ||||  |||| |||||| | | | ||||||||||| ||||||    
T  20125715 tgttaaacttttttaaagaataa-ttcttaattgaaaaactttaaa-agtgcctttaagacactcgttaacaagaccc 20125790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 16980849 - 16980777
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||| |||||||||| || |||||||||||||||| | |||| |||  |||||||||||||||||||||    
T  16980849 tctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaa 16980777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 42877360 - 42877239
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttctt 280  Q
    |||| |||||||| |||||||||| |||||||||||| ||||||||| ||| ||||||| | |||||||| | |||||        | |||||||||||     
T  42877360 ggcactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaacttttttcatgaataatttctc 42877261  T
Q  281 aattgagaaaccataaagagtg 302  Q
    |||||||||||  |||||||||    
T  42877260 aattgagaaactttaaagagtg 42877239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15206490 - 15206556
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagt 252  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||| |||  |||| ||||||||||    
T  15206490 tctttaaaagctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaagt 15206556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 25437884 - 25437938
Alignment:
Q  201 aataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||| ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  25437884 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaactgtt 25437938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 29558340 - 29558275
Alignment:
Q  158 gaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaat 223  Q
    |||||| |||||||||   | ||| ||||||||||  ||||| |||||||||||||||||||||||    
T  29558340 gaaatgttaacgaatgctctaaagacattctttaaggacttttaataataaatttttatgaaaaat 29558275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 34469557 - 34469632
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtta 256  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  34469557 ggcactctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatgcatcggaaattgaaatgtta 34469632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 38949015 - 38949126
Alignment:
Q  147 ttttttaaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaat 246  Q
    |||||| | |||||||| |||||| ||| || | |||| |||||||  |||| ||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  38949015 tttttttatgggaaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaat 38949114  T
Q  247 tgaagtgttaaa 258  Q
    ||||||||||||    
T  38949115 tgaagtgttaaa 38949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 31655581 - 31655473
Alignment:
Q  219 aaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgccatcagggcactcgt 318  Q
    ||||||||||||| ||||||||||| ||||||||||||||       |||||||||||| ||||||| |||||| |||| |||||| | |||||||||||    
T  31655581 aaaattgtgcattcaatacatcggatattgaagtgttaaacttttttaaagaataattttttaattgggaaaccttaaaaagtgccctaagggcactcgt 31655482  T
Q  319 taacgagac 327  Q
    |||| ||||    
T  31655481 taacaagac 31655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 39804851 - 39805013
Alignment:
Q  155 agggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttt-tatgaaaaattgtgcatttaatacatcggaaattgaagtg 253  Q
    ||||||||| |||| | ||  |||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||  |||  |||||||||||    
T  39804851 agggaaatgttaacaagtgcttttagggcattctttaaaa-ctttaaatagtaaattttttatgaaaaattgtgcatttaatgtatcaaaaattgaagtg 39804949  T
Q  254 ttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgccatcagggcactcg 317  Q
    |||||       ||| |||||||| |||||||  ||||| |||||||| || ||| ||||||||    
T  39804950 ttaaattttttcaaataataattttttaattggaaaaccttaaagagtaccctcaaggcactcg 39805013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 38380574 - 38380497
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    ||||||||||||  |||||||||| |||||||||||| |||||| |||||||||| | ||||||||||||||||||||    
T  38380574 ggcattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaa 38380497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 23133076 - 23133156
Alignment:
Q  219 aaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    ||||||||| ||| ||| ||||||||||||||||||||||       || |||||||||||||||||||||||||||||||    
T  23133076 aaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaaaccataaaga 23133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 50131091 - 50131028
Alignment:
Q  266 aaagaataatttcttaattgagaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
    |||||||||||||||||||| |||||| |||||| |||| ||||||||||||||||| ||||||    
T  50131091 aaagaataatttcttaattgggaaaccttaaagaatgccctcagggcactcgttaacaagaccc 50131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 303
Target Start/End: Complemental strand, 19652774 - 19652627
Alignment:
Q  156 gggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||||||| |||||||||  |||| |||| |||||||| | |||| ||| ||| |||||||||||| ||||||||| ||| ||| ||||||| || | ||    
T  19652774 gggaaatgttaacgaatgcttttagggcactctttaaatattttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactatt 19652675  T
Q  256 aaannnnnnnaaagaataatttcttaattgagaaaccataaagagtgc 303  Q
    | |       || ||||||| |||||||| ||||||| ||||||||||    
T  19652674 atacattttcaatgaataatatcttaatttagaaaccttaaagagtgc 19652627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 7388884 - 7388824
Alignment:
Q  188 tttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattg 248  Q
    ||||| ||||||| ||| |||||||||||| ||| ||||||||||||| ||||||||||||    
T  7388884 tttaagaactttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattg 7388824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 10097372 - 10097272
Alignment:
Q  152 taaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    ||||||||||||||||||| |||| | |  | ||||||||||| ||||| ||| |||||||||||||||| || |  ||||| ||||||| ||||| |||    
T  10097372 taaagggaaatgataacgagtgtcataagtgaattctttaaaatctttagatagtaaatttttatgaaaatttatatatttagtacatcgaaaatttaag 10097273  T
Q  252 t 252  Q
    |    
T  10097272 t 10097272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 49011887 - 49011950
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||||| ||| ||||| |||||| ||||||||||||| ||||| |||||||||| |||||    
T  49011887 actttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaa 49011950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 55855258 - 55855187
Alignment:
Q  184 attctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||||  ||||||||||||||||||||||||||||| ||| |||||||   ||| ||||||||||||||||    
T  55855258 attctttaaggactttaaataataaatttttatgaaaaatcgtg-atttaat--gtcgaaaattgaagtgttaaa 55855187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 24546676 - 24546767
Alignment:
Q  159 aaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    ||||| |||||| || |||  ||||||| ||||| | |||  |||| ||| |||||||||||| ||||| ||||||||||| ||||||||||    
T  24546676 aaatgttaacgagtgccttcgaggcattttttaagagcttagaatagtaattttttatgaaaatttgtgtatttaatacattggaaattgaa 24546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 32893113 - 32893050
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||||| |||| ||||||  ||||||||||||| ||| ||||| |||||||| |||||||    
T  32893113 actttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 32893050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 2063571 - 2063517
Alignment:
Q  201 aataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||| ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  2063571 aatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtt 2063517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 17126765 - 17126814
Alignment:
Q  270 aataatttcttaattgagaaaccataaagagtgccatcagggcactcgtta 320  Q
    |||||||||||||||||||| || ||||||||||| | |||||||||||||    
T  17126765 aataatttcttaattgagaatccctaaagagtgcc-taagggcactcgtta 17126814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 182 - 322
Target Start/End: Complemental strand, 14237243 - 14237101
Alignment:
Q  182 gcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttctta 281  Q
    |||||||||||  |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||       |  ||||||||| |||    
T  14237243 gcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaacttttatatggaataatttttta 14237144  T
Q  282 attgagaaaccataa--agagtgccatcagggcactcgttaac 322  Q
    ||||| ||| | |||  |||||||| | |||||||||||||||    
T  14237143 attgaaaaatcttaaagagagtgccctaagggcactcgttaac 14237101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 20142430 - 20142577
Alignment:
Q  182 gcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttctta 281  Q
    ||||| |||||  |||||||||||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||       ||| ||||||||||||    
T  20142430 gcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttctta 20142529  T
Q  282 attgagaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
    ||||| | ||| ||||||||| | | ||| ||||||||||| ||||||    
T  20142530 attgaaataccttaaagagtgtccttaggacactcgttaacaagaccc 20142577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 33285929 - 33286036
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccat 294  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||       ||| ||||||||||||||||| ||||| |    
T  33285929 actttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaattgataaacctt 33286028  T
Q  295 aaagagtg 302  Q
    ||||||||    
T  33286029 aaagagtg 33286036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 43238136 - 43238251
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattg 285  Q
    ||||||| ||||||||||| |||||||||||| |||||| | |||||||| ||||| ||||||||||||||||       || |||||||||||||||||    
T  43238136 tctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgttaaacttttttaaggaataatttcttaattg 43238235  T
Q  286 agaaaccataaagagt 301  Q
    | ||||| ||||||||    
T  43238236 aaaaaccttaaagagt 43238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 14855579 - 14855695
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattg 285  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||||| || ||||| ||||||||||||||||       |||||||||||| ||||| |    
T  14855579 tctttaaagactttaaataataaatttttatgaaaaagtgtccatttgatgcatcgtaaattgaagtgttaaactttttcaaagaataattttttaatag 14855678  T
Q  286 agaaaccataaagagtg 302  Q
     |||||| |||| ||||    
T  14855679 ggaaaccttaaaaagtg 14855695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 24457941 - 24457874
Alignment:
Q  183 cattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    |||| ||||||||||||||||| ||| |||||||||||| |||||| |||||| |||  |||||||||    
T  24457941 cattttttaaaaactttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaa 24457874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 25601494 - 25601411
Alignment:
Q  157 ggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatc 240  Q
    ||||||||||| || |||||||||| |||| |||||| |||||| ||||||||||| ||| ||||| |||| ||| ||| ||||    
T  25601494 ggaaatgataatgagtgtctttaagacattttttaaagactttacataataaatttgtataaaaaaatgtgtattcaatgcatc 25601411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 43631352 - 43631282
Alignment:
Q  150 tttaaagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaa 221  Q
    |||||||| |||||||||||||||||||  || || ||||| |||||||||||| |||||||||||| ||||    
T  43631352 tttaaaggaaaatgataacgaatgtcttcgagacactcttt-aaaactttaaatgataaatttttataaaaa 43631282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 31265094 - 31264965
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    ||||| ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||  |       ||||||||| ||| ||||| || |  | ||||||    
T  31265094 aaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaaga 31264995  T
Q  300 gtgccatcagggcactcgttaacgagaccc 329  Q
    ||||||   |||||||||||||| ||||||    
T  31264994 gtgccacaggggcactcgttaacaagaccc 31264965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 6904284 - 6904214
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||| |||||||| |||||| ||| ||| |||||||| ||| |||||| || ||| |||||||||||||||    
T  6904284 ggcactctttaaagactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaag 6904214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 12787964 - 12787894
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||| |||||||| | |||| ||| ||| |||||||||||| |||||||||||||  || |||||||||||    
T  12787964 ggcactctttaaatagtttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaag 12787894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 25280025 - 25279975
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    ||||| |||||||||||||||| || || ||||||||||| ||||||||||    
T  25280025 aaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaa 25279975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 11078169 - 11078116
Alignment:
Q  188 tttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcg 241  Q
    ||||| |||| |||||| ||||||||||||||||||| |||||| ||| |||||    
T  11078169 tttaagaactctaaatagtaaatttttatgaaaaattatgcattcaatgcatcg 11078116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 26342 - 26200
Alignment:
Q  156 gggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||||||  |||||| |||| ||| | |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||||| ||||| |||||||    
T  26342 gggaaatattaacgagtgtccttaggacattctttaagaactttaaataataaatttttatgggaaattgtacatttaatgcatcgaaaattaaagtgtt 26243  T
Q  256 aaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    |||       ||||||||||||||||||||| ||||| ||||||    
T  26242 aaacttttgcaaagaataatttcttaattga-aaaccttaaaga 26200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 44319846 - 44319993
Alignment:
Q  182 gcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttctta 281  Q
    ||||| |||||  |||||||||||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||       ||| ||||||||||||    
T  44319846 gcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttctta 44319945  T
Q  282 attgagaaaccataaagagtgccatcagggcactcgttaacgagaccc 329  Q
    ||||| | ||| ||||||||| | | ||| ||||||||||| ||||||    
T  44319946 attgaaataccttaaagagtgtccttaggacactcgttaacaagaccc 44319993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 186 - 321
Target Start/End: Complemental strand, 6771948 - 6771813
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattg 285  Q
    |||||||  |||||||||| |||||||||||| ||||||||||||| |||| ||||||||||||| || | |        ||||||||||||||||||||    
T  6771948 tctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataatttcttaattg 6771849  T
Q  286 agaaaccataaagagtgccatcagggcactcgttaa 321  Q
    ||||||| ||||||||| | | ||| ||||||||||    
T  6771848 agaaaccttaaagagtgtcttaaggacactcgttaa 6771813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 6775331 - 6775199
Alignment:
Q  197 tttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataa 296  Q
    |||||||| ||||| |||||| ||||||||||||| ||| ||||||||||| || |  | |        |||||||||||| |||||||||||||| |||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgagatttttcaaagaataatttattaattgagaaaccttaa 6775232  T
Q  297 agagtgccatcagggcactcgttaacgagaccc 329  Q
    |||||||| | ||| ||||| ||||| ||||||    
T  6775231 agagtgccctaaggacactccttaacaagaccc 6775199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 13040286 - 13040332
Alignment:
Q  183 cattctttaaaaactttaaataataaatttttatgaaaaattgtgca 229  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  13040286 cattctttaaagactttaaatagtaaatttttatgaaaaattgtgca 13040332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 5495991 - 5496080
Alignment:
Q  212 tttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaagagt 301  Q
    |||||| ||| ||||||||| ||| ||||| ||||| ||||||||||       || |||||||||||||||||||||||| ||||||||    
T  5495991 tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaattgagaaaccttaaagagt 5496080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 2959569 - 2959607
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaatt 224  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  2959569 tctttaaacacttttaataataaatttttatgaaaaatt 2959607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 41898362 - 41898301
Alignment:
Q  189 ttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    |||| |||| || |||||||||| ||||| ||| |||| |||||||| ||||||||||||||    
T  41898362 ttaataactgtagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaa 41898301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 322
Target Start/End: Complemental strand, 18734454 - 18734327
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccat 294  Q
    |||| ||||| |||||||||||||||||||||||||| |||  |||||||||||||||||||||       || |||||||||||||||||||||||| |    
T  18734454 acttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaaacctt 18734355  T
Q  295 aaagagtgccatcagggcactcgttaac 322  Q
    | |||||||| | ||| ||||| |||||    
T  18734354 agagagtgcctttaggacactcattaac 18734327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 32438068 - 32438149
Alignment:
Q  177 ttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  32438068 ttaatgcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaa 32438149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 33962933 - 33963054
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttctt 280  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||       |||||||||||||||    
T  33962933 ggcactctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttctt 33963032  T
Q  281 aattgagaaaccataaagagtg 302  Q
    |||||  ||||  |||||||||    
T  33963033 aattggaaaactttaaagagtg 33963054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 7933396 - 7933334
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaa 257  Q
    |||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  7933396 actttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaagtgttaa 7933334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 37597609 - 37597532
Alignment:
Q  176 tttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtg 253  Q
    ||||||||| | ||||| |||||||||||||||| |||||||  |||||||||||||||| ||| |||||||||||||    
T  37597609 tttaaggcactatttaataactttaaataataaaattttatgggaaattgtgcatttaatgcattggaaattgaagtg 37597532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 26271437 - 26271513
Alignment:
Q  154 aagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcat 230  Q
    ||||||||||||||||| |||||| || ||| | ||| | ||||||||||| ||||||||||| ||||||| |||||    
T  26271437 aagggaaatgataacgagtgtcttaaaagcactgttttagaactttaaatagtaaatttttataaaaaattatgcat 26271513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 18684458 - 18684409
Alignment:
Q  201 aataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaa 250  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||||||    
T  18684458 aataataactttttatgaaaatttgtgtatttaatacattggaaattgaa 18684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 33067709 - 33067768
Alignment:
Q  181 ggcattctttaaaaactttaaataataaattt-ttatgaaaaattgtgcatttaatacat 239  Q
    ||||||||||||| ||||||||| |||| ||| |||| |||||||||| |||||||||||    
T  33067709 ggcattctttaaacactttaaatgataagtttcttattaaaaattgtgtatttaatacat 33067768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 32859872 - 32859827
Alignment:
Q  210 tttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaactgtt 32859827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 3973915 - 3973783
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccat 294  Q
    |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||       || ||||||||||||||||| |||||| |    
T  3973915 acttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaattgggaaacctt 3973816  T
Q  295 aaagagtgccatcagggcactcgttaacgagac 327  Q
    |||||||||  | |||||||| |||||| ||||    
T  3973815 aaagagtgctcttagggcacttgttaacaagac 3973783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 327
Target Start/End: Original strand, 3995962 - 3996094
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccat 294  Q
    |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||       || |||||||| |||||||| |||||| |    
T  3995962 acttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataattgcttaattgggaaacctt 3996061  T
Q  295 aaagagtgccatcagggcactcgttaacgagac 327  Q
    |||||||||  | |||||||| |||||| ||||    
T  3996062 aaagagtgctcttagggcacttgttaacaagac 3996094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 4009495 - 4009622
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    ||||| ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||       || ||||||||||||||||| |||||| ||||||    
T  4009495 aaatagtaaatttttgtggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaattgggaaaccttaaaga 4009594  T
Q  300 gtgccatcagggcactcgttaacgagac 327  Q
    ||||  | |||||||| |||||| ||||    
T  4009595 gtgctcttagggcacttgttaacaagac 4009622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 32606386 - 32606448
Alignment:
Q  195 actttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaa 257  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||    
T  32606386 actttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaa 32606448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 49682310 - 49682167
Alignment:
Q  154 aagggaaatgataacgaatgtctttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtg 253  Q
    |||||||||| ||||||||||| | |  | ||| |||||  |||||||||| |||||||||||  ||||||||||||| ||| | |||||||||||| ||    
T  49682310 aagggaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatg 49682211  T
Q  254 ttaaannnnnnnaaagaataatttcttaattgagaaaccataaa 297  Q
    |||||       || ||||||||| |||||||| ||||| ||||    
T  49682210 ttaaacttttttaaggaataattttttaattgaaaaaccttaaa 49682167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 21813162 - 21813256
Alignment:
Q  197 tttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaac 291  Q
    |||||||| |||||||||||| |||||| |||||| ||| |||||||| || ||||||||||       || |||||||||||||||||||||||    
T  21813162 tttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaactttttcaatgaataatttcttaattgagaaac 21813256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 39145078 - 39145007
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaa 258  Q
    |||||||| ||||||||||||||||||| ||  |||||| |||||| ||| ||||||||||||||||||||||    
T  39145078 tctttaaagactttaaataataaatttt-atagaaaattatgcattcaatgcatcggaaattgaagtgttaaa 39145007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 34285457 - 34285330
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaata-atttcttaatt 284  Q
    ||||||| ||||||||||| ||||||||||| |||| |||||||||||||     |||| |||||||||||||       |||||||| |||| ||||||    
T  34285457 tctttaataactttaaatagtaaatttttataaaaatttgtgcatttaat-----ggaagttgaagtgttaaacttttttaaagaatatattttttaatt 34285363  T
Q  285 gagaaaccataaagagtgccatcagggcactcg 317  Q
    | ||| || ||||||||||| | ||| ||||||    
T  34285362 gggaagccttaaagagtgccctaaggacactcg 34285330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 40629208 - 40629154
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaat 235  Q
    |||||||||||||||||||| |||||||  |||||| |||| |||||||||||||    
T  40629208 ggcattctttaaaaactttagataataagattttataaaaacttgtgcatttaat 40629154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 29212821 - 29212746
Alignment:
Q  176 tttaaggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaag 251  Q
    |||| |||| |||||||| |||||| ||| |||||||||||  ||| ||||||||| ||||||||  |||||||||    
T  29212821 tttagggcactctttaaagactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaag 29212746  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 54290786 - 54290841
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    ||||||||  |||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  54290786 aaataatatctttttatgaaaacttgtgtatttaatacattggaaattgaactgtt 54290841  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 43804065 - 43804011
Alignment:
Q  201 aataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgtt 255  Q
    |||| ||| |||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  43804065 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtt 43804011  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 48811363 - 48811404
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtg 227  Q
    |||||||||||||| |||| ||| ||||||||||||||||||    
T  48811363 tctttaaaaacttttaatagtaagtttttatgaaaaattgtg 48811404  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 29988324 - 29988437
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattg 285  Q
    |||||||  |||||||||| |||||||||||| |||||||  |||| ||||||||  |||||||| |  || |       ||||||||||||||||||||    
T  29988324 tctttaaggactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaaat--tatacttttttaaagaataatttcttaattg 29988421  T
Q  286 agaaaccataaagagt 301  Q
    ||||||| ||||||||    
T  29988422 agaaaccttaaagagt 29988437  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 31556746 - 31556805
Alignment:
Q  181 ggcattctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatacatc 240  Q
    ||||||||||||| | |||| ||| |||||||||||| ||| ||||||||||||||||||    
T  31556746 ggcattctttaaagattttagatagtaaatttttatgtaaatttgtgcatttaatacatc 31556805  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 3441023 - 3441073
Alignment:
Q  186 tctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaata 236  Q
    |||||||| |||||| ||| |||||||||||||||| ||||| ||||||||    
T  3441023 tctttaaagactttagatagtaaatttttatgaaaacttgtgaatttaata 3441073  T

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Target: scaffold0633 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 5013 - 5115
Alignment:
Q  200 aaataataaatttttatgaaaaattgtgcatttaatacatcggaaattgaagtgttaaannnnnnnaaagaataatttcttaattgagaaaccataaaga 299  Q
    ||||| |||||||||||| |||||| |||||| ||| ||| |||||||||| |||||||       || ||||||||| ||||||| |||||| |||| |    
T  5013 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 5112  T
Q  300 gtg 302  Q
    |||    
T  5113 gtg 5115  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 21329 - 21276
Alignment:
Q  269 gaataatttcttaattgagaaaccataaagagtgccatcagggcactcgttaac 322  Q
    |||||||||||||||||  ||||| ||||||||| ||| ||| |||||||||||    
T  21329 gaataatttcttaattggaaaaccttaaagagtgtcattaggacactcgttaac 21276  T

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