View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_20 (Length: 301)
Name: NF3375_low_20
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 5110981 - 5111247
Alignment:
| Q |
23 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5110981 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcat |
5111080 |
T |
|
| Q |
123 |
tgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
222 |
Q |
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|| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111081 |
tggatcttaataacatggaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
5111180 |
T |
|
| Q |
223 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataatttt |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
5111181 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtgacaatgatttt |
5111247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 5084098 - 5083824
Alignment:
| Q |
15 |
cttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
114 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5084098 |
cttatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
5083999 |
T |
|
| Q |
115 |
aaatgcattgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagt |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||| |
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| T |
5083998 |
aaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattgggaaatctctctttccttgtatttcttgatctacaaggaaatagt |
5083899 |
T |
|
| Q |
215 |
ttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataatttt |
289 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |
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| T |
5083898 |
ttccatggtgagttaccacatgagttacttcagttgaagagattgaaattgttgaatttgagcaacaatgatttt |
5083824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 5093978 - 5094244
Alignment:
| Q |
23 |
attcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5093978 |
attcttagtaattggtcaatttcctcttctacttcttctttgtcttcatgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcat |
5094077 |
T |
|
| Q |
123 |
tgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatgg |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
5094078 |
tgaatcttagtagcatgggccttgaaggtacaatttctcctcaattgggaaatctttctttccttattgttcttgatttacagggcaatagtttccatgg |
5094177 |
T |
|
| Q |
223 |
tgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagcgacaataatttt |
289 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||||| |||| |||| ||| ||||| ||||| |
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| T |
5094178 |
tgagttaccacatgagttgcttcagttgaaaagattgaaattgttgaatttaagcaacaatgatttt |
5094244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 14427880 - 14427603
Alignment:
| Q |
15 |
cttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14427880 |
cttatcatattcttagtaattggtcaatttccacttctgcttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagt |
14427781 |
T |
|
| Q |
115 |
aaatgcattgaatcttagtaacatgggccttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
14427780 |
aaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattaggaaatctctctttccttgttgttcttgatctacatggcaatagt |
14427681 |
T |
|
| Q |
215 |
ttctatggtgagttaccacatgagttacttcagttg---aagagattgaaatggttggatttgagcgacaataatttt |
289 |
Q |
| |
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||| ||||||||||||||||||||||| |||| ||| || ||||||||| ||||||||||||| ||||| ||||| |
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| T |
14427680 |
ttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatgttggatttgagcaacaatgatttt |
14427603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 16872435 - 16872553
Alignment:
| Q |
31 |
taattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatctt |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
16872435 |
taattggtcaatctcctcttctacttctt---tctcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatctt |
16872531 |
T |
|
| Q |
131 |
agtaacatgggccttgaaggta |
152 |
Q |
| |
|
||||| ||||| |||||||||| |
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| T |
16872532 |
agtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 16873359 - 16873461
Alignment:
| Q |
144 |
ttgaaggtacaatttcccctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
243 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
244 |
tca |
246 |
Q |
| |
|
||| |
|
|
| T |
16873459 |
tca |
16873461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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