View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_21 (Length: 292)
Name: NF3375_low_21
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 1016263 - 1016533
Alignment:
| Q |
13 |
tcactttcacctcctctgttatgttacttctcgtgaacaaatgattctctctttaatacactgaaccaaaaccaaaacctcaatctccaacgttctatca |
112 |
Q |
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| T |
1016263 |
tcactttcacttcctctgttctgttacttctcgtaaacaaatgattctctctttagtacacagaaccaaaaccaaaacctcaatctccaacgttctatca |
1016362 |
T |
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| Q |
113 |
acaacattgttgttagatccaacacatcaacatggccccttcagcatcaccaccgccacccagtttcattctctccatcacagacaacaaccaaaccaac |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1016363 |
acaacattgttgttagattcaacacatcaacatggccccttcaacatcatcaccgccacccagtttcattctctccatcacagacaacaaccaaaccaac |
1016462 |
T |
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| Q |
213 |
accaaggacagcaaatgcggcgggtgccttgtggtagctctttgtcattgtctcatatgtttcattcttct |
283 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1016463 |
accaaggacagcaaatgcggcgggtgccttatggtagctctttgtcattgtctcatatgtttcattcttct |
1016533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 52 - 284
Target Start/End: Original strand, 5175630 - 5175844
Alignment:
| Q |
52 |
aatgattctctctttaatacactgaaccaaaaccaaaacctcaatctccaacgttctatcaacaacattgttgttagatccaacacatcaacatggcccc |
151 |
Q |
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||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
5175630 |
aatgactctctctttactacacaaaaccaaaaccaaaacctcaatctccaacattctatcaacaacgttgttgttagattcaacacatcaacatggcc-- |
5175727 |
T |
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| Q |
152 |
ttcagcatcaccaccgccacccagtttcattctctccatcacagacaacaaccaaaccaacaccaaggacagcaaatgcggcgggtgccttgtggtagct |
251 |
Q |
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| T |
5175728 |
----------ccaacaccacccagtttcactctctccatcagagaagaagaacaaa--aac----aggacagcaaatgtggcggttacctagtggtagct |
5175811 |
T |
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| Q |
252 |
ctttgtcattgtctcatatgtttcattcttctc |
284 |
Q |
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||||||| ||||||| ||||||||||||||||| |
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| T |
5175812 |
ctttgtccttgtctcgtatgtttcattcttctc |
5175844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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