View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3375_low_26 (Length: 257)

Name: NF3375_low_26
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3375_low_26
NF3375_low_26
[»] chr1 (8 HSPs)
chr1 (1-244)||(51843646-51843889)
chr1 (73-219)||(15088034-15088181)
chr1 (73-219)||(22210642-22210789)
chr1 (73-219)||(22219392-22219539)
chr1 (73-219)||(22207079-22207226)
chr1 (73-219)||(7898769-7898918)
chr1 (68-158)||(44193656-44193746)
chr1 (73-150)||(14115777-14115854)
[»] chr7 (7 HSPs)
chr7 (73-227)||(4340317-4340472)
chr7 (70-204)||(21959388-21959524)
chr7 (73-219)||(3079192-3079338)
chr7 (73-158)||(3080630-3080715)
chr7 (70-158)||(19802015-19802103)
chr7 (73-150)||(48477173-48477250)
chr7 (73-150)||(42786733-42786810)
[»] chr6 (8 HSPs)
chr6 (71-235)||(8519048-8519213)
chr6 (81-239)||(31113772-31113930)
chr6 (70-192)||(28144157-28144281)
chr6 (70-154)||(5131554-5131639)
chr6 (70-158)||(34256420-34256508)
chr6 (70-156)||(6405885-6405971)
chr6 (70-150)||(33301360-33301440)
chr6 (73-129)||(8706819-8706875)
[»] chr4 (10 HSPs)
chr4 (81-239)||(6735887-6736046)
chr4 (72-224)||(31666432-31666587)
chr4 (90-219)||(1505136-1505267)
chr4 (69-152)||(13701732-13701815)
chr4 (69-152)||(13712225-13712308)
chr4 (70-204)||(5579285-5579421)
chr4 (73-150)||(2895375-2895452)
chr4 (73-150)||(4851814-4851891)
chr4 (73-150)||(5908271-5908348)
chr4 (73-150)||(5599025-5599102)
[»] chr8 (5 HSPs)
chr8 (70-234)||(20811169-20811334)
chr8 (70-158)||(5556892-5556980)
chr8 (70-218)||(4844587-4844735)
chr8 (132-212)||(3166594-3166675)
chr8 (165-235)||(25335997-25336068)
[»] scaffold0043 (1 HSPs)
scaffold0043 (69-158)||(70359-70448)
[»] chr2 (5 HSPs)
chr2 (70-235)||(31347533-31347701)
chr2 (70-239)||(31314414-31314585)
chr2 (5-70)||(44546462-44546527)
chr2 (81-150)||(2696681-2696750)
chr2 (83-151)||(2314081-2314148)
[»] chr3 (10 HSPs)
chr3 (69-200)||(14521831-14521963)
chr3 (70-235)||(2747224-2747390)
chr3 (69-235)||(37489142-37489310)
chr3 (73-227)||(5835058-5835211)
chr3 (70-233)||(18110860-18111025)
chr3 (83-153)||(19440512-19440582)
chr3 (70-156)||(28034109-28034195)
chr3 (69-158)||(19360099-19360188)
chr3 (89-155)||(11418191-11418257)
chr3 (140-235)||(5938232-5938328)
[»] scaffold0018 (1 HSPs)
scaffold0018 (73-219)||(66159-66307)
[»] scaffold0060 (1 HSPs)
scaffold0060 (81-239)||(45333-45492)
[»] scaffold0158 (2 HSPs)
scaffold0158 (69-158)||(219-308)
scaffold0158 (70-156)||(37678-37764)
[»] chr5 (3 HSPs)
chr5 (70-158)||(41527647-41527735)
chr5 (69-153)||(37456410-37456492)
chr5 (109-181)||(26075867-26075939)
[»] scaffold0046 (1 HSPs)
scaffold0046 (70-159)||(89611-89701)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 51843646 - 51843889
Alignment:
Q  1 taggattacaaaaatggacgccattgtaggaaaccctttgcatctaaaatcggtgaatcatatctcccttgtaacacccttactagacattacctaggat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51843646 taggattacaaaaatggacaccattgtaggaaaccctttgcatctaaaatcggtgaatcatatctcccttgtaacacccttactagacattacctaggat 51843745  T
Q  101 atctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatataaaattctcgtcttatacctttgaa 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  51843746 atctagcgtgtgtgttaaacttggtattggatacattaaaattacaataataaaaattcccgcagaataaaatataaaattctcgtcttatacctttgaa 51843845  T
Q  201 ataataccactgacgtgaattttatatagtccagcaactgcttc 244  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  51843846 ataataccactgacgtgaattttatatagtccggcaactgcttc 51843889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 15088034 - 15088181
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    |  ||| |||    
T  15088034 aacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatgaaa 15088133  T
Q  173 tat-aaaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    |||  |||| |||||||||||||| ||||||||||||||| |||||||    
T  15088134 tatggaaatgctcgtcttatacctctgaaataataccacttacgtgaa 15088181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 22210642 - 22210789
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    |  ||| |||    
T  22210642 aacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatgaaa 22210741  T
Q  173 tat-aaaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    |||  |||| |||||||||||||| ||||||||||||||| |||||||    
T  22210742 tatggaaatgctcgtcttatacctctgaaataataccacttacgtgaa 22210789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 22219392 - 22219539
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    |  ||| |||    
T  22219392 aacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatgaaa 22219491  T
Q  173 tat-aaaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    |||  |||| |||||||||||||| ||||||||||||| |||||||||    
T  22219492 tatggaaatgctcgtcttatacctctgaaataataccattgacgtgaa 22219539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 22207079 - 22207226
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    |  ||| |||    
T  22207079 aacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatgaaa 22207178  T
Q  173 tat-aaaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    |||  |||| |||| ||||||| | |||||||||||||||||||||||    
T  22207179 tatggaaatgctcgacttatacgtctgaaataataccactgacgtgaa 22207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 7898769 - 7898918
Alignment:
Q  73 aacacccttactagacatt-acctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaa 171  Q
    ||||||| ||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||      ||||||     
T  7898769 aacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaagatttcctttgaataag 7898868  T
Q  172 atat--aaaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    ||||  |||||||||||||||||||| | |||||| || |||||||||||    
T  7898869 atatagaaaattctcgtcttatacctctaaaataacactactgacgtgaa 7898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 44193746 - 44193656
Alignment:
Q  68 cttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    |||||||||||| ||||||||||| |||| |||||||||   ||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  44193746 cttgtaacacccctactagacatttcctaagatatctagtacgtgtgttaaacttggcattggatactttaaaattacaattataaaaatt 44193656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 14115854 - 14115777
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14115854 aacacccatactagaaatcacctaggatatctagcatgtgtgttaaacttggcatcggatacattaaaattacaataa 14115777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 4340317 - 4340472
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||  | | |||||| |    
T  4340317 aacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcggtggatgcattaaaattacaataataaaaatttcttctgaataaga 4340416  T
Q  173 tat-aaaattctcgtcttatacctttgaaataataccactgacgtgaattttatat 227  Q
    |||  |||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  4340417 tatggaaatgctcgtcttatacctctgaaataataccactgacgtgaactttatat 4340472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 21959524 - 21959388
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||    
T  21959524 tgtaacacccctactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataataaaaatttcctctgaata 21959425  T
Q  170 aaatat--aaaattctcgtcttatacctttgaaataa 204  Q
    | ||||  |||||||||||||||||||| ||||||||    
T  21959424 atatatagaaaattctcgtcttatacctctgaaataa 21959388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 3079338 - 3079192
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||  | | |||| |||    
T  3079338 aacacccctactagacattacctatgatatctagcatgtgtgttaaacttgacattggatacattaaaatttcaataataaaatttttt-ctgaatgaaa 3079240  T
Q  173 tata-aaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    |||  |||| ||| | ||||||||||||||||||||||||| ||||||    
T  3079239 tatggaaatgctcattttatacctttgaaataataccactgtcgtgaa 3079192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 3080630 - 3080715
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    ||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  3080630 aacacccctactagacattacctatgatatctagcatgtgtgtgaaacttggcattggatacattaaaatttcaataataaaaatt 3080715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 19802015 - 19802103
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    |||||||||| ||||||| ||||||||||||||||||| || |||||||||||| || |||||||||||||||||||| ||||||||||    
T  19802015 tgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttgacaatggatacattaaaattacaacaataaaaatt 19802103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 48477173 - 48477250
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  48477173 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 48477250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 42786810 - 42786733
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||    
T  42786810 aacacccctactagaaatcacctaggatatctagcatttgtgttaaacttggcgtcggatacattaaaattacaataa 42786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 8519048 - 8519213
Alignment:
Q  71 gtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataa 170  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||  |   ||||||    
T  8519048 gtaacacccctactagacattacctaggatatctagcatgcgtgttaaacttggcagtggatacattaaaatcacaataataaaaatttcttttgaataa 8519147  T
Q  171 aatat-aaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
     ||||  |||| |||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  8519148 gatatggaaatgctcgtcttatgcctctgaaataataccactgacgtgaactttatatggtccagc 8519213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 31113930 - 31113772
Alignment:
Q  81 tactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatataaaat 180  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||      | |||||||| ||| ||     
T  31113930 tactagaaattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaacaataaaaaaattctctgaataaaacatagaaa 31113831  T
Q  181 tctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagcaact 239  Q
    |||||| |||||||| | |||||||| || ||||||||| ||||||| ||||| |||||    
T  31113830 tctcgtattatacctctaaaataatatcaatgacgtgaactttatatggtccaacaact 31113772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 28144157 - 28144281
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||| |||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||    |||||||    
T  28144157 tgtaacacccctactagaaatttcctatgatatctagcatgtatgttaaaattggcattggatacattaaaattacaataataaaaatttcctcggaata 28144256  T
Q  170 aaatat--aaaattctcgtcttata 192  Q
    | ||||  |||||||||||||||||    
T  28144257 atatatagaaaattctcgtcttata 28144281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 5131639 - 5131554
Alignment:
Q  70 tgtaacacccttactagacatt-acctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaa 154  Q
    |||||||||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5131639 tgtaacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaa 5131554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 34256508 - 34256420
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  34256508 tgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatt 34256420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 6405885 - 6405971
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaa 156  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||| ||||    
T  6405885 tgtaacacccatactagaaattacataggatatctagcatgtgcgttaaacttggcacttgatacattaaaattacaataattaaaa 6405971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 33301440 - 33301360
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    |||||||||| ||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||    
T  33301440 tgtaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgttggatacattgaagttacaataa 33301360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 8706875 - 8706819
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattg 129  Q
    ||||||| ||||||| || |||||||||||||||| || |||||||||||| |||||    
T  8706875 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttgacattg 8706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 6736046 - 6735887
Alignment:
Q  81 tactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatata-aaa 179  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||      || ||| | ||| |||    
T  6736046 tactagaaattacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaaaatttcctatgattaagacatagaaa 6735947  T
Q  180 ttctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagcaact 239  Q
    |||||||||||||||| ||||||||||||| |||| |||| ||||||| ||||| |||||    
T  6735946 ttctcgtcttatacctctgaaataataccagtgacttgaactttatatggtccaacaact 6735887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 31666587 - 31666432
Alignment:
Q  72 taacacccttactagacattacctaggat--atctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||| ||||||| ||||||||||||  ||||||| | | |||||||||||||||||||||||||||||||| ||||||||||| |  | | |||||    
T  31666587 taacacccctactagaaattacctaggatttatctagcatttatgttaaacttggcattggatacattaaaattagaataataaaaaattcttctgaata 31666488  T
Q  170 aaatataaaa-ttctcgtcttatacctttgaaataataccactgacgtgaatttta 224  Q
    | ||||  || |||||||||||||||||||||||||||||||||||| ||| ||||    
T  31666487 agatatggaagttctcgtcttatacctttgaaataataccactgacgcgaacttta 31666432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 1505136 - 1505267
Alignment:
Q  90 ttacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatat--aaaattctcgtc 187  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||    | |||||| ||||  ||||||||||||    
T  1505136 ttacctaggatatctagcatgtgtgttaaatttggcattggatacactaaaattacaataataaagatttcctctgaataagatatagaaaattctcgtc 1505235  T
Q  188 ttatacctttgaaataataccactgacgtgaa 219  Q
    |||||||| | |||||| || |||||||||||    
T  1505236 ttatacctctaaaataacactactgacgtgaa 1505267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 13701732 - 13701815
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataata 152  Q
    |||||||||||  |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13701732 ttgtaacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataata 13701815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 13712225 - 13712308
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataata 152  Q
    |||||||||||  |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13712225 ttgtaacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataata 13712308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 5579421 - 5579285
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaa-ttcatgcggaat 168  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||| |||| ||||||||| ||| |||||||||||||||||||||| ||| | | ||||    
T  5579421 tgtaacacccctactagaaatttcctaggatatctagcatgtgtgctaaatttggcattgaatatattaaaattacaataataaaaatttccttc-gaat 5579323  T
Q  169 aaaatat--aaaattctcgtcttatacctttgaaataa 204  Q
    || ||||  ||||| |||||||||||||| ||||||||    
T  5579322 aatatatagaaaatgctcgtcttatacctctgaaataa 5579285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 2895452 - 2895375
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  2895452 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 2895375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 4851814 - 4851891
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  4851814 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 4851891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 5908271 - 5908348
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||    
T  5908271 aacacccttactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattataataa 5908348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 5599025 - 5599102
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| | ||||||||| || |||||||||    
T  5599025 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattgaagttacaataa 5599102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 20811334 - 20811169
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| |||||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | | | |||    
T  20811334 tgtaacacccctactagaatttacgtaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataataaaacttcct-ctggata 20811236  T
Q  170 aaatata-aaattctcgtcttatacctttgaaat-aataccactgacgtgaattttatatagtccag 234  Q
    | ||||| ||||| ||||||||||||||| |||| ||||||| ||| ||||| ||||||| ||||||    
T  20811235 agatatagaaattatcgtcttatacctttaaaataaataccattgatgtgaactttatatggtccag 20811169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 5556892 - 5556980
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  5556892 tgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatt 5556980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 4844735 - 4844587
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||| |||||    | ||||     
T  4844735 tgtaacacccctactagaaatttcctaggatatctagcatgtgt--taaacttgggattggatacattaaaattacaataatacaaatttcctctgaatt 4844638  T
Q  170 aaatat--aaaattctcgtcttatacctttgaaataataccactgacgtga 218  Q
    | ||||  | |||||||||| || ||||||||||||| |||||||| ||||    
T  4844637 agatattgagaattctcgtcctagacctttgaaataacaccactgatgtga 4844587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 3166675 - 3166594
Alignment:
Q  132 tacattaaaattacaataataaaaattcatgcggaataaaatata-aaattctcgtcttatacctttgaaataataccactg 212  Q
    |||||||||||| |||||||||| |||    |  ||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  3166675 tacattaaaatttcaataataaatatttcctctaaataagatatagaaattttcgtcttatacctttgaaataataccactg 3166594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 25335997 - 25336068
Alignment:
Q  165 gaataaaatataaaa-ttctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
    |||||||||||| || |||||||||||||||| | |||| |||||||  ||||||| ||||||| |||||||    
T  25335997 gaataaaatatagaacttctcgtcttatacctctaaaatgataccacatacgtgaactttatatggtccagc 25336068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 70448 - 70359
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  70448 ttgtaacacccctactagacatttcctaggatatctagcatgtgtgttaaacttggcattgaatacattaaaattacaataataaaaatt 70359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 31347701 - 31347533
Alignment:
Q  70 tgtaacacccttactagacattacctaggat--atctagcgtgtgtgttaaacttggcattggatacattaaaattacaataat-aaaaattcatgcgga 166  Q
    |||||||||| ||||||| ||||||||||||  ||||||| | ||||||||| |||||||||||||||||||||||| |||||| |||| ||| | | ||    
T  31347701 tgtaacacccctactagaaattacctaggatttatctagcatttgtgttaaagttggcattggatacattaaaattagaataatcaaaacttcct-ctga 31347603  T
Q  167 ataaaatat-aaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
    |||| ||||  || ||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||    
T  31347602 ataagatatggaagttctcgtcttataactctgaaataataccactgacgtgaactttatatggtccagc 31347533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 31314414 - 31314585
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||      |||||    
T  31314414 tgtaacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaattttctttgaata 31314513  T
Q  170 --aaatataaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagcaact 239  Q
      | | | ||||||||||||||||||||| ||||||| || |||| |||||| ||| ||| ||||| |||||    
T  31314514 ggatacagaaaattctcgtcttataccttggaaataacactactggcgtgaactttgtatggtccatcaact 31314585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 44546527 - 44546462
Alignment:
Q  5 attacaaaaatggacgccattgtaggaaaccctttgcatctaaaatcggtgaatcatatctccctt 70  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  44546527 attagaaaaatggacgccattgttggaaaccctttgcgtctaaaatcagtgaatcatatctccctt 44546462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 2696750 - 2696681
Alignment:
Q  81 tactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataa 150  Q
    ||||||| || |||||||||||||||  ||||||||||||||||| | ||||||||| || |||||||||    
T  2696750 tactagaaatcacctaggatatctaggatgtgtgttaaacttggcgtcggatacattgaagttacaataa 2696681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 2314148 - 2314081
Alignment:
Q  83 ctagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataat 151  Q
    ||||| ||||||||| ||||||||| |||| |||| ||| || | | ||||||||||||||||||||||    
T  2314148 ctagaaattacctagaatatctagcatgtgcgttagact-ggtaatagatacattaaaattacaataat 2314081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 14521963 - 14521831
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaat 168  Q
    ||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||    | ||||    
T  14521963 ttgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaatttcctctgaat 14521864  T
Q  169 aaaata-taaaattctcgtcttatacctttgaa 200  Q
    || |||  |||||||||||||||||||| ||||    
T  14521863 aagatacaaaaattctcgtcttatacctctgaa 14521831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 2747390 - 2747224
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||    | | |||    
T  2747390 tgtaacacccctactagaaattacctaggatatctagaatgtatgttaaacttggcattggatacattaaaattacaatagtaaaaatttcctctggata 2747291  T
Q  170 aaatat-aaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
    | ||||   ||||| |||||||||||| || | |||||||| |||| |||| ||||||| |||||||    
T  2747290 agatatggtaattcccgtcttatacctctggagtaataccattgacatgaactttatatggtccagc 2747224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 37489142 - 37489310
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaat 168  Q
    ||||||||||| ||||| |  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    | ||||    
T  37489142 ttgtaacacccctactaaaattttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaatactaaaaatttcctctgaat 37489241  T
Q  169 aaaatat--aaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
    || ||||  ||||||||| |  ||||||| || ||||| |||||||| ||||| ||| ||| |||||||    
T  37489242 aagatataaaaaattctccttatatacctctgcaataacaccactgatgtgaactttgtatggtccagc 37489310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 5835058 - 5835211
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaa 172  Q
    ||||||| ||||| | ||||||||||||||||||| || || ||||||||||||||||||||||||||||||| ||||||||||||    | ||  || |    
T  5835058 aacacccctactataaattacctaggatatctagcatgagtattaaacttggcattggatacattaaaattaccataataaaaatttcctctga--aaga 5835155  T
Q  173 tata-aaattctcgtcttatacctttgaaataataccactgacgtgaattttatat 227  Q
    |||| |||||||| | |||||||| ||||||||||||||| ||||||| |||||||    
T  5835156 tatagaaattctcattttatacctctgaaataataccacttacgtgaactttatat 5835211  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 18110860 - 18111025
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaata 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| ||| || |||||||      |||||    
T  18110860 tgtaacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaatttcaacaacaaaaatttcctttgaata 18110959  T
Q  170 aaat--ataaaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtcca 233  Q
    | ||  | ||||||||||||||||||||||||||||| || |||| |||||| ||| ||| |||||    
T  18110960 agatacagaaaattctcgtcttatacctttgaaataacactactggcgtgaactttgtatggtcca 18111025  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 19440512 - 19440582
Alignment:
Q  83 ctagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataa 153  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19440512 ctagaaattacctaggatatctagcgtgtgtgttaaacttggcattgggtacattaaaattacaataataa 19440582  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 28034109 - 28034195
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaa 156  Q
    |||||||||| ||||||| ||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28034109 tgtaacacccctactagaaatttccaaggatatctagcatgtgtgttaaaattggcattggatacattaaaattacaataataaaaa 28034195  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 19360188 - 19360099
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    ||||||||||| ||||||| ||||| || |||||||||| || ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  19360188 ttgtaacacccctactagaaattacatacgatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatt 19360099  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 11418191 - 11418257
Alignment:
Q  89 attacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaa 155  Q
    |||||||||||||||||||  ||| |||||||||||||||| |||||||||||||||||||||||||    
T  11418191 attacctaggatatctagcacgtgcgttaaacttggcattgcatacattaaaattacaataataaaa 11418257  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 5938232 - 5938328
Alignment:
Q  140 aattacaataataaaaattcatgcggaataaaatata-aaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagc 235  Q
    |||||| ||||||||||||    | |||||| ||||| |||||||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||    
T  5938232 aattaccataataaaaatttcctctgaataagatatagaaattctcatcttatacctctgaaataataccacttacgtgaactttatatggtccagc 5938328  T

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Target: scaffold0018 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 66307 - 66159
Alignment:
Q  73 aacacccttactagacattacctaggatatctagcgtg-tgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaa 171  Q
    ||||||| ||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||| ||||||||||||||| ||||| |      ||||||     
T  66307 aacacccctactagaaattacctagaatatctagcatggtgtgttaaacttggcattgggtacgttaaaattacaataagaaaaaatttctttgaataag 66208  T
Q  172 atata-aaattctcgtcttatacctttgaaataataccactgacgtgaa 219  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  66207 atatagaaattctcgtcttatacctctaaaataataccactgacgtgaa 66159  T

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Target: scaffold0060 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 45492 - 45333
Alignment:
Q  81 tactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatata-aaa 179  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||  |||||||||||| |||||||||| |||    | |||||| ||||| |||    
T  45492 tactagaaattacctaggatatctagcatgtgtgttaaacttgacattgagtacattaaaatttcaataataaatatttcctctgaataagatatagaaa 45393  T
Q  180 ttctcgtcttatacctttgaaataataccactgacgtgaattttatatagtccagcaact 239  Q
    || | || |||||||| ||||||||||||||| | ||||| |||| || |||||||||||    
T  45392 tttttgtattatacctctgaaataataccactcatgtgaactttaaatggtccagcaact 45333  T

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Target: scaffold0158 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 308 - 219
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    ||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||  |||||||||    
T  308 ttgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacgataaaaatt 219  T

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Target: scaffold0158; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 37764 - 37678
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaa 156  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||  |||||||    
T  37764 tgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcagtggatacattaaaatgacaacgataaaaa 37678  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 41527647 - 41527735
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataaaaatt 158  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  41527647 tgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatt 41527735  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 37456492 - 37456410
Alignment:
Q  69 ttgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaataataa 153  Q
    |||||||||||  || ||||||| | | ||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||    
T  37456492 ttgtaacaccccaacaagacatttcttgggatatctagcatgagt--taaacttggcattggatacattaaaattataataataa 37456410  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 26075939 - 26075867
Alignment:
Q  109 tgtgtgttaaacttggcattggatacattaaaattacaataataaaaattcatgcggaataaaatataaaatt 181  Q
    |||| ||||||||| | ||||||| |||| |||||||||||||||||| |  ||| ||| ||||| |||||||    
T  26075939 tgtgcgttaaacttagtattggatgcattgaaattacaataataaaaaattctgctgaacaaaatttaaaatt 26075867  T

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Target: scaffold0046 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 89611 - 89701
Alignment:
Q  70 tgtaacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggcattggatacattaaaattacaat-aataaaaattc 159  Q
    |||||||||| ||||||| |||  |||||||||||||| |||| ||||||||||| | ||||||||||||||||||||| |||||||||||    
T  89611 tgtaacacccctactagaaattttctaggatatctagcatgtgcgttaaacttggtactggatacattaaaattacaataaataaaaattc 89701  T

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