View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_28 (Length: 253)
Name: NF3375_low_28
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 33618820 - 33618956
Alignment:
| Q |
120 |
tataggtatctcatcgttaaaatatacatcttctctttagagaagtaat---tatacaaagccaacctataacacgtgcaaggtgggatagggtgtcgaa |
216 |
Q |
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| T |
33618820 |
tataggtatctcatcgttaaaatatacatcttctctttagagaagtaataattatacaaagccaacctataacacgtgcaaggtgggatagggcgacgaa |
33618919 |
T |
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| Q |
217 |
cctcacaataagggtctaaaaaggggcgtttttgaga |
253 |
Q |
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| T |
33618920 |
cctcacaataagggtctaaaaaggggcgttcttgaga |
33618956 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 33618702 - 33618746
Alignment:
| Q |
28 |
cttttggcaaagctacattgagcttttttaacacgtggttatatg |
72 |
Q |
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| T |
33618702 |
cttttggtaaagctacattgagcttttttaacacgtggctatatg |
33618746 |
T |
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