View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3375_low_29 (Length: 253)
Name: NF3375_low_29
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_29 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 49191921 - 49192135
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
49191921 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtc |
49192020 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49192021 |
caagccgctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
49192120 |
T |
|
| Q |
222 |
ccttgtcaccctctc |
236 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
49192121 |
ccttgtcgccctctc |
49192135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 49203027 - 49203238
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||| ||||||||||||||| |
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|
| T |
49203027 |
agtcaaagcattcatcctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtc |
49203126 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49203127 |
caagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
49203226 |
T |
|
| Q |
222 |
ccttgtcaccct |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49203227 |
ccttgtcaccct |
49203238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 49208198 - 49208397
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||||| || ||||||||||||||| | ||| |
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|
| T |
49208198 |
agtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtc |
49208297 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
49208298 |
caagcagctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccct |
49208397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 49188185 - 49188399
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||| |||||||| || || || || ||||| ||||| ||||| ||||||||||| ||| |
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|
| T |
49188185 |
agtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtc |
49188284 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49188285 |
caagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccct |
49188384 |
T |
|
| Q |
222 |
ccttgtcaccctctc |
236 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
49188385 |
ccttctcaccctctc |
49188399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 49213038 - 49213246
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||| |||||||| || || || || ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
49213038 |
agtcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtc |
49213137 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||| || ||||| || ||||| || ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
49213138 |
caagcagccttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttcagttctcactttaattccct |
49213237 |
T |
|
| Q |
222 |
ccttgtcac |
230 |
Q |
| |
|
||| |||| |
|
|
| T |
49213238 |
gcttctcac |
49213246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 26756564 - 26756778
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
26756564 |
agtcaaagcattcatcctctcaacctcaccttgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtc |
26756663 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | | |
|
|
| T |
26756664 |
caagccgctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaatttctt |
26756763 |
T |
|
| Q |
222 |
ccttgtcaccctctc |
236 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
26756764 |
ccttctcagcctctc |
26756778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 32592628 - 32592414
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||| |||||||| || || ||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
32592628 |
agtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtc |
32592529 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
32592528 |
caagccgctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccct |
32592429 |
T |
|
| Q |
222 |
ccttgtcaccctctc |
236 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
32592428 |
ccttgtcactctctc |
32592414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 37030696 - 37030910
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtc |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||| ||||| ||||||||||| ||| |
|
|
| T |
37030696 |
agtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtc |
37030795 |
T |
|
| Q |
122 |
caagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccct |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37030796 |
caagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccct |
37030895 |
T |
|
| Q |
222 |
ccttgtcaccctctc |
236 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
37030896 |
ccttctcaccctctc |
37030910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 51824717 - 51824920
Alignment:
| Q |
24 |
tcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtcca |
123 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||| |||||||| | || | ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
124 |
agccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctcc |
223 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
51824817 |
agccgctttcttcatcgccaactcagagttag---------cctcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctcc |
51824907 |
T |
|
| Q |
224 |
ttgtcaccctctc |
236 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
51824908 |
ttgttactctctc |
51824920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 31527430 - 31527517
Alignment:
| Q |
149 |
gaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
236 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
31527430 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctc |
31527517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 31527338 - 31527409
Alignment:
| Q |
22 |
agtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctc |
93 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||| |||||||| || || |||||||||||||| |
|
|
| T |
31527338 |
agtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctc |
31527409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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