View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3375_low_35 (Length: 247)

Name: NF3375_low_35
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3375_low_35
NF3375_low_35
[»] chr4 (34 HSPs)
chr4 (13-229)||(41468033-41468249)
chr4 (61-187)||(49446582-49446709)
chr4 (65-209)||(20389994-20390138)
chr4 (69-209)||(44646522-44646662)
chr4 (87-209)||(9802631-9802752)
chr4 (86-180)||(33982423-33982517)
chr4 (61-186)||(44647870-44647995)
chr4 (77-166)||(49144775-49144864)
chr4 (63-183)||(42197031-42197150)
chr4 (73-167)||(50115058-50115149)
chr4 (61-219)||(6316797-6316953)
chr4 (99-205)||(39727581-39727686)
chr4 (61-219)||(24395185-24395343)
chr4 (100-186)||(31871083-31871169)
chr4 (65-166)||(49769110-49769211)
chr4 (61-167)||(38494747-38494851)
chr4 (105-189)||(40480203-40480287)
chr4 (76-159)||(42844062-42844145)
chr4 (69-186)||(27346290-27346407)
chr4 (110-187)||(53919859-53919936)
chr4 (99-205)||(12103867-12103973)
chr4 (68-158)||(44088286-44088376)
chr4 (105-184)||(12329286-12329366)
chr4 (70-209)||(41370166-41370305)
chr4 (107-186)||(53737829-53737908)
chr4 (78-207)||(1696194-1696323)
chr4 (61-186)||(7627951-7628076)
chr4 (152-209)||(42370393-42370450)
chr4 (131-184)||(44504115-44504168)
chr4 (96-157)||(44670854-44670915)
chr4 (69-166)||(5387904-5388003)
chr4 (131-183)||(25196131-25196183)
chr4 (141-209)||(28165361-28165429)
chr4 (133-209)||(30978709-30978785)
[»] chr5 (22 HSPs)
chr5 (63-208)||(3263717-3263862)
chr5 (67-209)||(28793304-28793446)
chr5 (65-209)||(8247036-8247180)
chr5 (61-205)||(19692696-19692841)
chr5 (61-191)||(22473421-22473552)
chr5 (69-190)||(5356295-5356416)
chr5 (63-208)||(10051700-10051845)
chr5 (69-177)||(1354345-1354453)
chr5 (61-182)||(35395184-35395305)
chr5 (97-216)||(34032115-34032234)
chr5 (67-183)||(142350-142465)
chr5 (64-184)||(21582366-21582486)
chr5 (70-187)||(14474998-14475115)
chr5 (106-187)||(27016662-27016743)
chr5 (96-188)||(22871910-22872002)
chr5 (61-209)||(31672380-31672529)
chr5 (86-182)||(31889611-31889708)
chr5 (131-183)||(8761922-8761974)
chr5 (131-183)||(27650867-27650919)
chr5 (133-203)||(16161394-16161464)
chr5 (131-212)||(2816144-2816225)
chr5 (123-212)||(17098237-17098326)
[»] chr6 (12 HSPs)
chr6 (61-203)||(12383007-12383149)
chr6 (79-208)||(31702747-31702874)
chr6 (81-179)||(35241410-35241509)
chr6 (141-219)||(22696005-22696084)
chr6 (99-186)||(7465469-7465556)
chr6 (131-182)||(12307821-12307872)
chr6 (99-176)||(6546746-6546823)
chr6 (139-186)||(6048337-6048384)
chr6 (86-180)||(8176324-8176418)
chr6 (64-121)||(22695473-22695531)
chr6 (133-183)||(30038864-30038914)
chr6 (96-209)||(30509285-30509398)
[»] chr2 (22 HSPs)
chr2 (63-208)||(44941072-44941216)
chr2 (61-209)||(18053007-18053154)
chr2 (69-209)||(8773670-8773810)
chr2 (65-210)||(20682990-20683135)
chr2 (62-209)||(8789825-8789972)
chr2 (69-206)||(34546265-34546402)
chr2 (68-183)||(4238322-4238436)
chr2 (96-214)||(2825980-2826098)
chr2 (70-219)||(42945012-42945162)
chr2 (99-185)||(6761753-6761839)
chr2 (99-183)||(42966951-42967036)
chr2 (113-183)||(433551-433621)
chr2 (70-183)||(31448285-31448399)
chr2 (70-180)||(35228732-35228842)
chr2 (131-207)||(2393099-2393174)
chr2 (78-183)||(7271771-7271880)
chr2 (131-183)||(33275952-33276004)
chr2 (131-209)||(12075581-12075657)
chr2 (131-184)||(3199547-3199600)
chr2 (77-209)||(13197220-13197351)
chr2 (131-183)||(41079457-41079509)
chr2 (141-205)||(44921336-44921399)
[»] chr3 (24 HSPs)
chr3 (61-207)||(54911987-54912133)
chr3 (61-209)||(34758898-34759046)
chr3 (69-208)||(52340118-52340257)
chr3 (61-187)||(18399148-18399275)
chr3 (67-216)||(38704945-38705094)
chr3 (69-183)||(27968193-27968307)
chr3 (70-182)||(30687077-30687189)
chr3 (74-176)||(7754772-7754875)
chr3 (107-209)||(30463992-30464092)
chr3 (124-183)||(37775370-37775429)
chr3 (70-183)||(25548196-25548310)
chr3 (155-209)||(29099144-29099198)
chr3 (78-187)||(38388703-38388812)
chr3 (106-189)||(41571601-41571685)
chr3 (104-183)||(779707-779786)
chr3 (78-209)||(28434480-28434610)
chr3 (99-178)||(55110027-55110106)
chr3 (105-183)||(38094453-38094531)
chr3 (106-215)||(48322240-48322348)
chr3 (131-207)||(1680517-1680593)
chr3 (172-212)||(33687487-33687527)
chr3 (99-166)||(53433213-53433280)
chr3 (107-167)||(36600507-36600566)
chr3 (99-147)||(40392423-40392471)
[»] chr1 (29 HSPs)
chr1 (62-214)||(7549807-7549959)
chr1 (62-209)||(44719150-44719297)
chr1 (61-209)||(40377011-40377159)
chr1 (62-185)||(31745397-31745520)
chr1 (76-215)||(45584502-45584641)
chr1 (91-187)||(4039621-4039717)
chr1 (70-187)||(36393475-36393592)
chr1 (61-209)||(31652592-31652739)
chr1 (61-184)||(50974563-50974686)
chr1 (64-208)||(5787434-5787577)
chr1 (61-182)||(12148288-12148409)
chr1 (61-184)||(5851529-5851650)
chr1 (109-209)||(34445638-34445738)
chr1 (69-150)||(42850094-42850175)
chr1 (78-209)||(25302041-25302172)
chr1 (70-185)||(40203076-40203191)
chr1 (107-184)||(5115641-5115718)
chr1 (104-183)||(25095604-25095683)
chr1 (97-180)||(28171507-28171590)
chr1 (96-186)||(36321649-36321739)
chr1 (61-205)||(48947177-48947321)
chr1 (96-209)||(4521032-4521143)
chr1 (152-205)||(42851095-42851147)
chr1 (67-183)||(13954126-13954241)
chr1 (70-177)||(34596118-34596223)
chr1 (99-178)||(12636335-12636414)
chr1 (63-158)||(50328308-50328402)
chr1 (99-184)||(33744162-33744247)
chr1 (131-183)||(5597711-5597763)
[»] chr8 (17 HSPs)
chr8 (61-182)||(31206306-31206427)
chr8 (78-187)||(45368729-45368838)
chr8 (62-207)||(5217748-5217890)
chr8 (70-178)||(38956884-38956992)
chr8 (69-182)||(5020051-5020162)
chr8 (67-146)||(9632961-9633040)
chr8 (96-208)||(7513319-7513431)
chr8 (70-208)||(42760145-42760282)
chr8 (70-181)||(20169716-20169827)
chr8 (99-207)||(2124093-2124203)
chr8 (141-184)||(10335092-10335135)
chr8 (124-186)||(7044383-7044445)
chr8 (154-208)||(9124077-9124131)
chr8 (164-209)||(2258183-2258228)
chr8 (141-209)||(4573077-4573144)
chr8 (70-146)||(17521001-17521077)
chr8 (99-183)||(22209401-22209485)
[»] chr7 (28 HSPs)
chr7 (61-209)||(8170000-8170148)
chr7 (61-171)||(48137790-48137900)
chr7 (77-209)||(47507579-47507711)
chr7 (89-187)||(42493699-42493798)
chr7 (66-180)||(38452169-38452283)
chr7 (61-182)||(30412909-30413030)
chr7 (94-180)||(5248093-5248179)
chr7 (66-142)||(46684550-46684626)
chr7 (81-171)||(2964056-2964146)
chr7 (67-209)||(15034793-15034935)
chr7 (76-209)||(16878676-16878809)
chr7 (152-209)||(32829095-32829152)
chr7 (131-187)||(45375405-45375462)
chr7 (99-215)||(2741136-2741252)
chr7 (96-183)||(676397-676483)
chr7 (87-178)||(44495216-44495307)
chr7 (72-162)||(43670427-43670517)
chr7 (68-207)||(36285774-36285912)
chr7 (107-183)||(1360531-1360607)
chr7 (61-113)||(47305515-47305567)
chr7 (107-209)||(17157804-17157907)
chr7 (70-181)||(44391426-44391537)
chr7 (107-208)||(10031956-10032057)
chr7 (105-184)||(8920736-8920815)
chr7 (106-186)||(7596180-7596261)
chr7 (98-209)||(27986683-27986789)
chr7 (174-218)||(25176390-25176434)
chr7 (143-183)||(35754039-35754079)
[»] scaffold0246 (1 HSPs)
scaffold0246 (105-189)||(18142-18226)
[»] scaffold0121 (1 HSPs)
scaffold0121 (131-209)||(28834-28912)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 41468249 - 41468033
Alignment:
Q  13 aatatcgatttataaacgactaaaacccatattttaaaatcgagaaatgggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaat 112  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  41468249 aatatcgatttataaacaactaaaactcatattttaaaatcgagaaatgggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaat 41468150  T
Q  113 caatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagaccttt 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  41468149 caatgcatcagaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtaccccagagaaactcgttaacaagaccttt 41468050  T
Q  213 aaaataagtattaactc 229  Q
    |||||||||||||||||    
T  41468049 aaaataagtattaactc 41468033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 49446582 - 49446709
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttc 159  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||| || |||||||||| |||| |||    
T  49446582 gggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttc 49446681  T
Q  160 ttcttttggaattcttaaagagtgcccc 187  Q
    |||||||||||| |||||||||||||||    
T  49446682 ttcttttggaatccttaaagagtgcccc 49446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 20390138 - 20389994
Alignment:
Q  65 actagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctt 164  Q
    |||||||||||| |||||||||||||||||||| ||||  | ||| |||||||||||  |||||  ||||||| |||||||||||| || ||||||| ||    
T  20390138 actagttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgtt 20390039  T
Q  165 ttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||    
T  20390038 ttggaattcttaaagaatgccccgggaacactcgttaacaagacc 20389994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 44646522 - 44646662
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    |||||||| ||| ||| |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||| |||||| ||| ||||||||||||     
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  169 aattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||| |||||||| |||||| ||   ||||||||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagacc 44646662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 9802631 - 9802752
Alignment:
Q  87 taacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||  ||||||| |||||||||||| ||||||| ||||||| ||||| |||||||||| |     
T  9802631 taacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaatt-ttaaagagtgtct 9802729  T
Q  187 caggaaaactcgttaacaagacc 209  Q
    | |||| ||||||||||||||||    
T  9802730 cgggaatactcgttaacaagacc 9802752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  86 gtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaaga 180  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 44647870 - 44647995
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    |||||||  ||||||||||| ||| |||||||||||| ||||||| |||||| |||||||| ||||| | ||||||| | ||| |||||| ||| |||||    
T  44647870 gggcactgattaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttct 44647969  T
Q  161 tcttttggaattcttaaagagtgccc 186  Q
    |||||||||||  |||||||||||||    
T  44647970 tcttttggaatctttaaagagtgccc 44647995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 49144864 - 49144775
Alignment:
Q  77 ctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    ||||||||||||| || ||||||||||||||||||||||||||||  |||||  ||| |||||||||||||||| |||||||||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttt 49144775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 183
Target Start/End: Complemental strand, 42197150 - 42197031
Alignment:
Q  63 gcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttc 162  Q
    ||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||| |||  |||||  ||||||| | ||||| |||| |||||||||||    
T  42197150 gcactagttaaagtctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttc 42197051  T
Q  163 ttttggaattcttaaagagtg 183  Q
    |||| ||||| ||||||||||    
T  42197050 ttttagaatt-ttaaagagtg 42197031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 50115149 - 50115058
Alignment:
Q  73 aggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttg 167  Q
    |||||||||||||||||||||||||||   ||| ||||||||||||||  ||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  50115149 aggcctttaaatggtaacttatcataa---tatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttcttttg 50115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 6316797 - 6316953
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||| ||||||||  || |||| ||||||||||| ||||||| ||||||||||||||   |||||  ||| |||  ||||||||||| || ||||||    
T  6316797 gggcactggttaaggc--ttgaatgataacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttct 6316894  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacctttaaaataa 219  Q
    ||||||| |||  |||||||||||||| |    |||||||||||||||| |||||||||    
T  6316895 tcttttgaaatctttaaagagtgccccggaggcactcgttaacaagacccttaaaataa 6316953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 39727581 - 39727686
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcg 198  Q
    ||||| ||||||||||||||||| ||||| | ||||||| ||||||| |||  ||||||| ||||||| |||| ||||||| |||||||||||| |||||    
T  39727581 aaaatttatgtaatcaatgcatcagaaattgaaatatttgacttttt-atagaataatttattcttttagaatccttaaagtgtgccccaggaacactcg 39727679  T
Q  199 ttaacaa 205  Q
    |||||||    
T  39727680 ttaacaa 39727686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 24395185 - 24395343
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttc 159  Q
    |||||||  ||||| |||||| || |||||||   || ||||||| |||||||||||  |  ||||||| ||||||| || ||||||||||  |||||||    
T  24395185 gggcactctttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttagaaatcgaaatatttgaccttttttataaattaatttc 24395284  T
Q  160 ttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacctttaaaataa 219  Q
    ||||||| |||| ||||||||||||||| || | |||||||||||||| || ||||||||    
T  24395285 ttcttttagaatccttaaagagtgcccc-gggacactcgttaacaagatctataaaataa 24395343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 31871083 - 31871169
Alignment:
Q  100 aaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    |||| ||||||||||||||||| ||||| | ||||||| |||||||||||| |||||||||||||||| ||| |||| | |||||||    
T  31871083 aaatttatgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttcttttgaaatgcttagaaagtgccc 31871169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 49769110 - 49769211
Alignment:
Q  65 actagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctt 164  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||||| | ||  ||||   ||| || ||||||||||||| || ||||||||||    
T  49769110 actacttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttctt 49769209  T
Q  165 tt 166  Q
    ||    
T  49769210 tt 49769211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 38494747 - 38494851
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||| ||||| ||| ||| ||||||||||||||| |||||||||||||||  |||||| || ||||  ||||||| ||| |||||||||    
T  38494747 gggcactagttaaggtctttatatgataatttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgcctttttt-taa-ataatttct 38494844  T
Q  161 tcttttg 167  Q
    | |||||    
T  38494845 ttttttg 38494851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 40480203 - 40480287
Alignment:
Q  105 tatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccag 189  Q
    ||||||||||||| ||| | ||| | ||||||| |||||||||| ||||||||||||||||| | || ||||||||||| |||||    
T  40480203 tatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccag 40480287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 42844145 - 42844062
Alignment:
Q  76 cctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttc 159  Q
    |||||||| ||||| |||| || ||||||| |||||||||||||||  |||||| ||||||| | |||||||||| ||||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttc 42844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 27346407 - 27346290
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    ||||||| ||||||| |  || ||||||||||||| | | |||| |||||| | ||||||  ||| ||| |||||||||||| |||| ||||| |||| |    
T  27346407 gttaagggctttaaaagaaaatttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttag 27346308  T
Q  169 aattcttaaagagtgccc 186  Q
    ||| ||||||||||||||    
T  27346307 aatccttaaagagtgccc 27346290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 53919936 - 53919859
Alignment:
Q  110 aatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgcccc 187  Q
    |||||||||||| ||||| | ||| ||| |||||||||||  ||||||| |||||||| ||| |||||||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtgcccc 53919859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 12103867 - 12103973
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcg 198  Q
    ||||||| |||||||||||  |  ||||||| | ||||| |||||||||| | ||||||| ||||||| |||| |||||| ||||||| |  || |||||    
T  12103867 aaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtgcccaaaaaacactcg 12103966  T
Q  199 ttaacaa 205  Q
    |||||||    
T  12103967 ttaacaa 12103973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 44088376 - 44088286
Alignment:
Q  68 agttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataattt 158  Q
    |||||||| |||||||| |||||||||||| || |||| ||||||||||||| |  |||||  ||||||| | ||||| |||| |||||||    
T  44088376 agttaaggactttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 12329366 - 12329286
Alignment:
Q  105 tatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    |||||||||||||||| |||||| | ||||||| || ||||||||   ||||||||| |||||| ||| ||||||||||||    
T  12329366 tatgtaatcaatgcatttgaaattgaaatatttgactttttttatggaataatttctccttttgaaatgcttaaagagtgc 12329286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 41370166 - 41370305
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    |||||| |||| ||| |||| || | || ||||| | ||||||||||||||   |||| | ||||||||||||||||   | ||||||||||  ||||||    
T  41370166 ttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaatttgga 41370265  T
Q  170 attcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
     | ||||| |||||| || | || ||||||||||||||||    
T  41370266 ttgcttaatgagtgctccggaaacactcgttaacaagacc 41370305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 53737829 - 53737908
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    |||| |||||||||  ||||||| ||||||| | ||||||| |  |||||||||| ||||||||  ||||||||||||||    
T  53737829 tgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccc 53737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 1696194 - 1696323
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaa 177  Q
    ||||||| ||||||| |  | ||||| ||||||||||||||||| ||||| | |||||||  |||||||||   ||||| |||||||||   || |||||    
T  1696194 tttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttcttttaatatacttaa 1696293  T
Q  178 agagtgccccaggaaaactcgttaacaaga 207  Q
    ||| ||   | |||| ||||||||||||||    
T  1696294 agaatgtttcgggaacactcgttaacaaga 1696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 7628076 - 7627951
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    |||||||  ||||| |||||||| |||||||| |  | ||||  ||||||| ||||| ||  ||||| | || |||| |||||| |||   |||||||||    
T  7628076 gggcactctttaagacctttaaaaggtaactttttttgaaaagttatgtaaccaatgtattggaaattgaaacatttgacttttctatggaataatttct 7627977  T
Q  161 tcttttggaattcttaaagagtgccc 186  Q
     |||||||||| ||||||||||||||    
T  7627976 ccttttggaatgcttaaagagtgccc 7627951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 42370393 - 42370450
Alignment:
Q  152 ataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||| ||| |||||| || ||||||||||||||||  || ||||||||||||||||    
T  42370393 ataattgcttgttttggtatgcttaaagagtgccccaaaaacactcgttaacaagacc 42370450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 44504115 - 44504168
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    ||||||| ||| |||||| |||||||||||||||||| ||  ||||||||||||    
T  44504115 aatatttgactattttatgacataatttcttcttttgaaacccttaaagagtgc 44504168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 44670854 - 44670915
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatt 157  Q
    ||||||||||||||||| | |||||  ||||||| ||||||||| ||||||| || ||||||    
T  44670854 ataaaaatatatgtaattattgcattggaaatcgaaatatttaatttttttaaaagataatt 44670915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 5387904 - 5388003
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgta--atcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    |||||| | ||||||||||||| | | || || |||||||||  ||||||||||   |||||| ||||||||| |||||  ||| |||||||||||||||    
T  5387904 gttaagacttttaaatggtaacgttttatgaatatatatgtacaatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttctttt 5388003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 25196183 - 25196131
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||| ||||||||||||  |||||| ||||||| |||| |||||||||||    
T  25196183 aatatttgacttttttataaattaattttttcttttagaatccttaaagagtg 25196131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 28165429 - 28165361
Alignment:
Q  141 ttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||||||| ||||||||||||||| ||||  |||||||||  | ||||   ||||||||||||||||    
T  28165429 ttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagacc 28165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 30978709 - 30978785
Alignment:
Q  133 tatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||| |||||||||  | || |||||||  |||||||| ||||||||||||||||||   |||| |||||||||||    
T  30978709 tatttgacttttttaataaatcatttcttaatttggaatgcttaaagagtgccccaggggcactccttaacaagacc 30978785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 3263862 - 3263717
Alignment:
Q  63 gcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttc 162  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||| || ||||||||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttc 3263763  T
Q  163 ttttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    ||||| ||||||||||||||||||| | |  |||||||||||||||    
T  3263762 ttttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 28793446 - 28793304
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    |||||||||  |||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||| || ||||||||||||    
T  28793446 tagttaaggtatttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttctttt 28793347  T
Q  167 ggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||| ||||||||| || || | |  ||||||||||||||||    
T  28793346 ggaatccttaaagagcgcaccggaagcactcgttaacaagacc 28793304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 8247180 - 8247036
Alignment:
Q  65 actagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctt 164  Q
    ||||||||||| ||||||||||||||||||||| ||||  | | ||||||||||||| ||||||| ||||||| |||||||||||| || ||||||||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttctt 8247081  T
Q  165 ttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||| ||||||||||| | | ||   ||||||||||||||||    
T  8247080 ttggaatccttaaagagtgtcacgggggcactcgttaacaagacc 8247036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 19692841 - 19692696
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttc 159  Q
    ||||||| |||||||||||||||| |||||||||||| ||| ||| ||||||||||||||   |||||| ||||||| || ||||||||||  |||||||    
T  19692841 gggcactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttc 19692742  T
Q  160 ttcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    |||||||| |||  |||||||||||||| || | ||||||||||||    
T  19692741 ttcttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 22473552 - 22473421
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatattt-aacttttttataacataatttc 159  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||| |||||   ||||||| |  |||||||||| ||||||||    
T  22473552 gggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttc 22473453  T
Q  160 ttcttttggaattcttaaagagtgccccagga 191  Q
    |||||||| ||| |||||||| ||||| ||||    
T  22473452 ttcttttgaaatccttaaagaatgccctagga 22473421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 5356295 - 5356416
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||  |||||| ||||||| || |||||||||  ||||||||| ||||||    
T  5356295 gttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttgg 5356394  T
Q  169 aattcttaaagagtgccccagg 190  Q
     || |||||||| ||| |||||    
T  5356395 tatccttaaagaatgctccagg 5356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 10051845 - 10051700
Alignment:
Q  63 gcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttc 162  Q
    |||||||||||| ||||||||||||||||||| || ||||  | | ||||||||||||| |||||   ||||||| |||||||||||| || ||||||||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttc 10051746  T
Q  163 ttttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    ||||  ||| |||||||||||||  ||| | |||||||||||||||    
T  10051745 ttttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 1354345 - 1354453
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    ||||||||||||||| ||||| ||||||| ||||||||| ||||||||  ||  ||||||| |||||||||||||||||||| |||||||||| |||| |    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  169 aattcttaa 177  Q
    |||||||||    
T  1354445 aattcttaa 1354453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 35395305 - 35395184
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||| |||||  ||||| ||||| |||||||||| ||||||| |||||||||||||||  ||||   ||||||| |||||||||||| ||| |||||    
T  35395305 gggcactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttct 35395206  T
Q  161 tcttttggaattcttaaagagt 182  Q
    ||||||||||| ||||||||||    
T  35395205 tcttttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 34032115 - 34032234
Alignment:
Q  97 taaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaact 196  Q
    |||||||  ||||||||| ||| | |||||| | ||||||||||||||||| |  |||||| ||| |||| |||| |||||||||||||||| | | |||    
T  34032115 taaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgccccaaggacact 34032214  T
Q  197 cgttaacaagacctttaaaa 216  Q
    ||||||||||||| ||||||    
T  34032215 cgttaacaagacccttaaaa 34032234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 142350 - 142465
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    |||||||| ||||||||  |||||||||||||||| ||| ||||||||||| ||| ||||| | ||||||| | |||||||||| ||   ||||||||||    
T  142350 tagttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat-gcttcttctttt 142448  T
Q  167 ggaattcttaaagagtg 183  Q
    ||||| | |||||||||    
T  142449 ggaatccctaaagagtg 142465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 21582486 - 21582366
Alignment:
Q  64 cactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttct 163  Q
    ||||||| ||||  |||||| | ||||||||||| ||||| | ||| |||| || ||| ||||||| ||||||| ||| |||||||| ||||||| ||||    
T  21582486 cactagtcaaggtttttaaaggataacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattct 21582387  T
Q  164 tttggaattcttaaagagtgc 184  Q
    |||||||| |||||| |||||    
T  21582386 tttggaatccttaaaaagtgc 21582366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 14474998 - 14475115
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||| |||| ||||||| |  | ||||| ||||||||||| ||||||||||| | ||||||| || ||||||||  |||||||||||||||  |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  170 attcttaaagagtgcccc 187  Q
    || ||| ||||| |||||    
T  14475098 atgcttgaagagagcccc 14475115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 27016743 - 27016662
Alignment:
Q  106 atgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgcccc 187  Q
    |||||||| ||||||  ||||| | ||| ||| ||||||||||   |||||||||||||||||||| |||||||||||||||    
T  27016743 atgtaatcgatgcattggaaattgaaatttttgacttttttatggaataatttcttcttttggaatgcttaaagagtgcccc 27016662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 22872002 - 22871910
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgcccca 188  Q
    |||||||||| |||||||  |||||  || |||  ||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||| ||||    
T  22872002 ataaaaatatgtgtaatccgtgcattagatatcttaatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtccca 22871910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 31672529 - 31672380
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaactttttt-ataacataatttc 159  Q
    |||||||  ||||| |||||||| |||||||| |  | ||| | | ||||||||||||||  ||||| | || |||| |||||||| ||   ||| ||||    
T  31672529 gggcactctttaagacctttaaaaggtaactttttttgaaattttttgtaatcaatgcattggaaattgaaacatttgactttttttatggaatagtttc 31672430  T
Q  160 ttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    | |||||||||| ||||||||||||||| ||   ||||||||||||||||    
T  31672429 tccttttggaatgcttaaagagtgccccgggggcactcgttaacaagacc 31672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 31889708 - 31889611
Alignment:
Q  86 gtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttcttcttttggaattcttaaagagt 182  Q
    ||||||| | || ||||||| ||||||||||||||  ||||| | ||||||| || ||||||||||  |||||||||||||| ||||  |||||||||    
T  31889708 gtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 8761974 - 8761922
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||||||||||  |||||||||| |||| |||| |||||||||||    
T  8761974 aatatttaacttttttatagaataatttctttttttagaatccttaaagagtg 8761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 27650867 - 27650919
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||||||||||  |||||||||| |||||||||  ||||||||||    
T  27650867 aatatttaacttttttatataataatttctttttttggaatgtttaaagagtg 27650919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 16161464 - 16161394
Alignment:
Q  133 tatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaac 203  Q
    ||||||||||||||  || |||||||| |  |||||||| ||||||||||||||| | || ||||||||||    
T  16161464 tatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtgccccggaaacactcgttaac 16161394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 2816225 - 2816144
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagaccttt 212  Q
    ||||||| | ||||||| |  |||||| ||||||||| ||| |||||||||| |||| | |  |||||||||||||||||||    
T  2816225 aatatttgatttttttaaagaataattgcttcttttgaaatgcttaaagagtaccccggtagcactcgttaacaagaccttt 2816144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 17098237 - 17098326
Alignment:
Q  123 gaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagaccttt 212  Q
    ||||||| ||||||| ||||||||| |  |||||| ||| |||||  ||  |||||||||||||| |  | |||||||||||||||||||    
T  17098237 gaaatcgaaatatttgacttttttaaataataattgcttattttgtgatgtttaaagagtgccccggcgacactcgttaacaagaccttt 17098326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 12383007 - 12383149
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||| | ||||||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  12383007 gggcactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttct 12383106  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaac 203  Q
     |||||| |||||||||||||||||||| ||  ||||||||||    
T  12383107 ccttttgaaattcttaaagagtgccccaagagcactcgttaac 12383149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  79 ttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaa 178  Q
    |||||| ||||||| | |||||||||| ||||||||||||||  |||||   |||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  179 gagtgccccaggaaaactcgttaacaagac 208  Q
    |||||||||  | | |||||||||||||||    
T  31702847 gagtgcccc--ggacactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  81 aaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaactt-ttttataacataatttcttcttttggaattcttaaag 179  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||  ||||||||| || |||||||| |||||||||| ||||  ||| |||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 22696005 - 22696084
Alignment:
Q  141 ttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaaga-cctttaaaataa 219  Q
    |||||||||| |||||||||||||||||||| ||||||||||||  |||    |||||||||||||| ||||||||||||    
T  22696005 ttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaagatcctttaaaataa 22696084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 7465556 - 7465469
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    ||||| ||||||||||||||||| ||||| | ||||||| ||||||||||   | ||||||||||||  |||| |||||| |||||||    
T  7465556 aaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtgccc 7465469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 12307872 - 12307821
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagt 182  Q
    ||||||| |||||||||||| |||||||||||||||| ||| ||||||||||    
T  12307872 aatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 6546746 - 6546823
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattctta 176  Q
    ||||||| || |||||||||||  ||||| | || ||||||||||| ||||| ||||||| || ||||||||||||||    
T  6546746 aaaatatgtgcaatcaatgcattagaaattgaaaaatttaacttttgtataaaataattttttattttggaattctta 6546823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 6048337 - 6048384
Alignment:
Q  139 acttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    ||||||||||||  |||||||||||||| ||||| |||||||||||||    
T  6048337 acttttttataaattaatttcttcttttagaatttttaaagagtgccc 6048384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 8176418 - 8176324
Alignment:
Q  86 gtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaaga 180  Q
    ||||||||| || ||||||| |||||| ||||||||  |||| | ||| ||| ||||||||| ||  | |||||||||||| |||| ||||||||    
T  8176418 gtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 22695473 - 22695531
Alignment:
Q  64 cactagttaaggcctttaaatggtaacttatca-taaaaatatatgtaatcaatgcatc 121  Q
    |||| |||||||| ||||||||||||||| | | ||||||||| |||||||||||||||    
T  22695473 cactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatc 22695531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 30038914 - 30038864
Alignment:
Q  133 tatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||| ||||| |||||||||| ||||  |||||||||||||||    
T  30038914 tatttaacttttatataaaataatttcttattttaaaattcttaaagagtg 30038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 30509398 - 30509285
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaac 195  Q
    ||||||||| |||||||||||||||   |||||| ||| ||| | ||||||| |  |||||| ||| |||||| || |||||||||||  || |  | ||    
T  30509398 ataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacac 30509299  T
Q  196 tcgttaacaagacc 209  Q
    ||||||||||||||    
T  30509298 tcgttaacaagacc 30509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 44941072 - 44941216
Alignment:
Q  63 gcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttc 162  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttc 44941171  T
Q  163 ttttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    |||| |||| ||||||||||| | ||||   |||||||||||||||    
T  44941172 ttttagaatccttaaagagtgtctcagg-gcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 18053007 - 18053154
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||| ||||||||||||||||| ||||| ||||||| ||| ||| | ||||||||||||| ||||||  ||||||| |||||||||||| |||||||||    
T  18053007 gggcattagttaaggcctttaaa-ggtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttct 18053105  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||| ||| ||||||||||| |||||||| ||||||||||||||||    
T  18053106 tcttttgaaatccttaaagagtgtcccaggaacactcgttaacaagacc 18053154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 8773670 - 8773810
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    ||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||  ||||||| |||||||||||| ||||||||||||||| |    
T  8773670 gttaaggtctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttag 8773769  T
Q  169 aattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||  ||||||||||||||  ||  ||||||||||||||||    
T  8773770 aatctttaaagagtgccccgagagtactcgttaacaagacc 8773810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 20682990 - 20683135
Alignment:
Q  65 actagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctt 164  Q
    ||||||||| |  |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| | |||||||||| ||  |||||||||    
T  20682990 actagttaaagtttttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttctt 20683089  T
Q  165 ttggaattcttaaagagtgccccaggaaaactcgttaacaagacct 210  Q
    ||||||| ||||||||||| ||| ||   |||||||||||||||||    
T  20683090 ttggaatccttaaagagtgtcccgggggcactcgttaacaagacct 20683135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 8789972 - 8789825
Alignment:
Q  62 ggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttctt 161  Q
    |||||| ||||||| ||||||| ||||||||| ||| ||||||| ||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  8789972 ggcactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttctt 8789873  T
Q  162 cttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||| ||||  |||||||||| |||   |  ||||||||||||||||    
T  8789872 cttttagaatctttaaagagtgtcccgaaagtactcgttaacaagacc 8789825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 34546265 - 34546402
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    |||||| || ||||||| ||||||||||| ||||| | ||||||||||||||| ||||||| | ||||| ||||||||||||  |||||||||| |||||    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  169 aattcttaaagagtgccccaggaaaactcgttaacaag 206  Q
    ||| || ||||||||| |||||   |||||||||||||    
T  34546365 aatcctcaaagagtgctccaggggcactcgttaacaag 34546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 4238322 - 4238436
Alignment:
Q  68 agttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttg 167  Q
    |||||| | ||||||| | |||||||| || ||||||| |||||||||||||||  |||||| ||||||| | |||||||||| |||||||||||||||     
T  4238322 agttaaagtctttaaaagataacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttcttttt 4238420  T
Q  168 gaattcttaaagagtg 183  Q
    |||| |||||||||||    
T  4238421 gaatccttaaagagtg 4238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 2825980 - 2826098
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaac 195  Q
    |||||||| | ||||||||||||||  ||||||| ||||||| ||||||||| || |||||||||| |||| | || |||||||||| || |||| | ||    
T  2825980 ataaaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagtaccacagggacac 2826079  T
Q  196 tcgttaacaagacctttaa 214  Q
    |||||||||||||| ||||    
T  2826080 tcgttaacaagacccttaa 2826098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 42945012 - 42945162
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||||   ||||||| ||||||| | ||||| |||| ||||| | |||||||  |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  170 attcttaaagagtgcc-ccaggaaaactcgttaacaagacctttaaaataa 219  Q
    || |||||| |||||| |||| || |||||||||  ||||| || ||||||    
T  42945112 atccttaaaaagtgcctccagaaacactcgttaaggagacccttcaaataa 42945162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 6761753 - 6761839
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgcc 185  Q
    ||||| ||||||||||||||||  ||||| | ||||||| |||||||||||  || |||| |||||||||||| |||||||||||||    
T  6761753 aaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcc 6761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 42967036 - 42966951
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaactt-ttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||| ||||||||||||||||| | ||| | |||||||||||| |||||| | ||||||||||||||| | ||||||||||||||    
T  42967036 aaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttcttttagtattcttaaagagtg 42966951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 433551 - 433621
Alignment:
Q  113 caatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||  |||||  ||||||||||||||||||||  |||||| |||||||||||| |||||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtg 433621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 31448285 - 31448399
Alignment:
Q  70 ttaaggcctttaaatggtaacttatc-ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    |||| |||||||| ||||||||| |  ||||||||||  ||||| |||| ||| ||||||  ||| ||||| |||||||||| |||||||||||||| |     
T  31448285 ttaaagcctttaattggtaacttttttataaaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttaga 31448384  T
Q  169 aattcttaaagagtg 183  Q
    |||  ||||||||||    
T  31448385 aatctttaaagagtg 31448399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 35228842 - 35228732
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||||||| | ||||   || ||||||| |||||| |||||||  ||||||| ||||||| |  |||||| || |||||||||||||||| |    
T  35228842 ttaagacctttaaatgattactttatatgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttcttttgaa 35228743  T
Q  170 attcttaaaga 180  Q
    || ||||||||    
T  35228742 atccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2393099 - 2393174
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaaga 207  Q
    ||||||| ||||||||||||  |||||||||||||| |||| |||||||| ||| || |||  ||||||||||||||    
T  2393099 aatatttgacttttttataaattaatttcttcttttagaatccttaaagaatgctcc-ggagcactcgttaacaaga 2393174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 7271880 - 7271771
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac----ttttttataacataatttcttcttttggaattc 173  Q
    |||||||| |||||| | || ||||||||||||||||||||||  |||||   ||||||| ||    |||||||||| ||| |||||| |||| |||| |    
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttctttttttagaatcc 7271781  T
Q  174 ttaaagagtg 183  Q
    ||||||||||    
T  7271780 ttaaagagtg 7271771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 33275952 - 33276004
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||||||||||||| || |||||||||| |||| |||| |||||||||||    
T  33275952 aatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtg 33276004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 12075581 - 12075657
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||| |||||| ||| | ||| ||||||||||||| || ||||||||||||||| ||   ||||||||||||||||    
T  12075581 aatatttgacttttgtatgaaatagtttcttcttttggtatgcttaaagagtgcccccgg--cactcgttaacaagacc 12075657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 3199547 - 3199600
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    ||||||| | |||||||||| |||||||||| |||| ||||| |||||||||||    
T  3199547 aatatttgaattttttataaaataatttcttattttagaattattaaagagtgc 3199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 13197351 - 13197220
Alignment:
Q  77 ctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattctta 176  Q
    ||||||||| ||| || | |||||||| |||||||| |||||||   |||| | ||||||| ||||||| || | |||||||||| ||||  |||  ||     
T  13197351 ctttaaatgataattttttataaaaatttatgtaattaatgcattaaaaattgaaatatttgacttttt-atgaaataatttcttattttaaaatcattg 13197253  T
Q  177 aagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||| |||  |||||||||||| |||||||    
T  13197252 aagagtgtcccgagaaaactcgttagcaagacc 13197220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 41079509 - 41079457
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||||||||    |||||||||| ||||| |||||||||||||||    
T  41079509 aatatttaacttttttaaggaataatttcttattttgaaattcttaaagagtg 41079457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 44921336 - 44921399
Alignment:
Q  141 ttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    |||||||||  ||||||||| ||||||||||  |||||||||||||| || | ||||||||||||    
T  44921336 ttttttatagaataatttctccttttggaatg-ttaaagagtgccccggggacactcgttaacaa 44921399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 54911987 - 54912133
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    |||||||||||||||||| ||||||  |||||||||| ||||||| ||||||||||||||| ||||| | ||||||||||||| |||||| ||| ||| |    
T  54911987 gggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttat 54912086  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaaga 207  Q
    ||||||||||||||||||||||||  | || | ||||||||||||||    
T  54912087 tcttttggaattcttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 34759046 - 34758898
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||| | | ||| ||||||| |||||||||||| |||||| ||    
T  34759046 gggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattact 34758947  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||| |||| ||||||||||||||| |    ||||||||||||||||    
T  34758946 tctttttgaatccttaaagagtgccccggaggcactcgttaacaagacc 34758898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatattt-aacttttttataacataatttcttcttttg 167  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||| |  |||||||||| || |||||||| ||||    
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  168 gaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    |||| ||||||||||||| | ||| ||||||||||||||||    
T  52340218 gaatccttaaagagtgcctc-ggagaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 18399148 - 18399275
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttat-aacataatttc 159  Q
    ||||| |||||||||| |||||||||||||||||||| ||||  | ||||||||||||||| ||||||| ||||||| |||||||||| || || |||||    
T  18399148 gggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttc 18399247  T
Q  160 ttcttttggaattcttaaagagtgcccc 187  Q
    |||||||||||| |||||||||||||||    
T  18399248 ttcttttggaatccttaaagagtgcccc 18399275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 38704945 - 38705094
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    |||||||  ||||||||||  || |||||||| |||||| ||||||||||||||| ||||||  ||||||| || ||||||||| ||||||| |||||||    
T  38704945 tagttaaaacctttaaatgacaatttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttt 38705044  T
Q  167 ggaattcttaaagagtgccccaggaaaactcgttaacaagacctttaaaa 216  Q
     ||||||||||||||| |  | ||   |||||||||||||||| ||||||    
T  38705045 tgaattcttaaagagtacttcgggggcactcgttaacaagacccttaaaa 38705094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 27968307 - 27968193
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatc-aatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttg 167  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||  |||||  ||| ||| |||||||||||| || |||||||||||||    
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttataa-attatttcttcttttg 27968209  T
Q  168 gaattcttaaagagtg 183  Q
    |||| |||||| ||||    
T  27968208 gaatccttaaaaagtg 27968193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 30687077 - 30687189
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    |||||| ||||||||| ||| ||||||| ||||||| |||||||||||||||  |||||  | | ||| | |||||||||||||||||||||||||| ||    
T  30687077 ttaaggtctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttaga 30687176  T
Q  170 attcttaaagagt 182  Q
    || ||||||||||    
T  30687177 atccttaaagagt 30687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 7754772 - 7754875
Alignment:
Q  74 ggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttcttcttttggaatt 172  Q
    ||||||||||| |||||||||||| ||||||| | ||||||||||||| ||||||| |||  || || |||||||||| || | |||||||||||||||     
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T
Q  173 ctta 176  Q
    ||||    
T  7754872 ctta 7754875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 30463992 - 30464092
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaag 206  Q
    ||||||||||||||   |||| | ||| ||| |||||||||||  |||||||||||||||||||| ||||| |||||||||  ||| |||||||||||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaatgcttaacgagtgcccc--gaacactcgttaacaag 30464089  T
Q  207 acc 209  Q
    |||    
T  30464090 acc 30464092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 37775370 - 37775429
Alignment:
Q  124 aaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  37775370 aaatcgaaatatttaacttttttataaaataatttcttctttaggaattcttatagagtg 37775429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 25548196 - 25548310
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaac-ttttttataacataatttcttcttttgg 168  Q
    ||||| |||||||||| ||| || | || ||||||| ||||||||||||||  ||||| | |||||||||| |||||||||| ||| ||||||||||| |    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  169 aattcttaaagagtg 183  Q
    | | |||||||||||    
T  25548296 agtccttaaagagtg 25548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 29099198 - 29099144
Alignment:
Q  155 atttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||||||||||||    
T  29099198 atttcttcttttggaatgcttaaaaagtgcccctggaacactcgttaacaagacc 29099144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 38388812 - 38388703
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaa 177  Q
    ||||||| |||| || | |||||||||| |||||||||||||    |||||  ||||||| ||||||||||||  |||||||||||||| ||||  ||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  178 agagtgcccc 187  Q
    | ||||||||    
T  38388712 atagtgcccc 38388703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 41571601 - 41571685
Alignment:
Q  106 atgtaatcaatgcatctgaaatcggaatatttaactttttta-taacataatttcttcttttggaattcttaaagagtgccccag 189  Q
    |||||||||||||||  ||||| | ||| |||  |||||||| | | |||||||||||||||||||| |||||||||||||||||    
T  41571601 atgtaatcaatgcattcgaaattgaaatttttggcttttttaatgaaataatttcttcttttggaatgcttaaagagtgccccag 41571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 779707 - 779786
Alignment:
Q  104 atatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||||| |||||||   |||||  ||||||||||||||| |||| ||||||| ||||||| ||||| ||||||||||    
T  779707 atatgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtg 779786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 28434610 - 28434480
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaa 177  Q
    |||| |||||||||| |  | ||||| |||||||||||||||||  |||||  ||||||| ||||||| || | ||||||| |||| ||  ||| |||||    
T  28434610 tttatatggtaactttttttgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttttt-atgaaataatttattctcttaaaatccttaa 28434512  T
Q  178 agagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||| ||| |||  ||||||||||||||||    
T  28434511 agagtgtcccgggagcactcgttaacaagacc 28434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 55110106 - 55110027
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaa 178  Q
    ||||||||||||||||||||||   |||||| ||||||| | |||||||||| ||||||| |||| ||| ||| ||||||    
T  55110106 aaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttctcttgaaatccttaaa 55110027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 38094531 - 38094453
Alignment:
Q  105 tatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||||||||||||| ||||| | ||||||| |||||| |||   ||||||||||||| |||||| |||||| ||||    
T  38094531 tatgtaatcaatgcatcagaaattgaaatatttgacttttatatggaataatttcttcttatggaatgcttaaaaagtg 38094453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 48322240 - 48322348
Alignment:
Q  106 atgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    |||||||||||| ||  ||||||| || |||| ||||||| | || |||||| ||| |||| |||| |||||||||| ||||  ||| ||||||||||||    
T  48322240 atgtaatcaatgtattggaaatcgaaacatttgactttttaaaaaaataattacttattttagaatgcttaaagagtacccc-tgaatactcgttaacaa 48322338  T
Q  206 gacctttaaa 215  Q
    |||| |||||    
T  48322339 gacccttaaa 48322348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 1680517 - 1680593
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaaga 207  Q
    ||||||| ||||||||||||  |||||| ||||||| |||| |||||||| ||| || | || ||||||||||||||    
T  1680517 aatatttgacttttttataaattaatttattctttttgaatccttaaagaatgctccggaaacactcgttaacaaga 1680593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 33687487 - 33687527
Alignment:
Q  172 tcttaaagagtgccccaggaaaactcgttaacaagaccttt 212  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  33687487 tcttaaagagtgccccaggatcactcgttaacaagaccttt 33687527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 53433213 - 53433280
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    ||||| |||||||||||||||||  ||||   ||||||| |||||||||||  |||||||||||||||    
T  53433213 aaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttt 53433280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 36600507 - 36600566
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttg 167  Q
    ||||||||||||||  ||||||| || ||||||||||||| ||| |||||||||| |||||    
T  36600507 tgtaatcaatgcatgggaaatcgaaaaatttaacttttttttaa-ataatttcttattttg 36600566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 40392471 - 40392423
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaactttttta 147  Q
    ||||||||||||||||||||||  |||||   |||||||||||||||||    
T  40392471 aaaatatatgtaatcaatgcattagaaataaaaatatttaactttttta 40392423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 7549959 - 7549807
Alignment:
Q  62 ggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttctt 161  Q
    |||||||| |||||||||||||| |||||||||||| ||||  | ||| ||||||||||| ||||||| ||||||| |||||||||||| || |||||||    
T  7549959 ggcactagctaaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttctt 7549860  T
Q  162 cttttggaattcttaaagagtgccccaggaaaactcgttaacaagacctttaa 214  Q
    |||||| ||||||||||||||| |||  | | |||||||||||||||| ||||    
T  7549859 cttttgaaattcttaaagagtgtcccgaggacactcgttaacaagacccttaa 7549807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 44719297 - 44719150
Alignment:
Q  62 ggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttctt 161  Q
    |||||||||||||  ||||||||||||| ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||||||| ||||| | ||    
T  44719297 ggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatatt 44719198  T
Q  162 cttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
     ||||||||| |||||| |||| ||| || | ||||||||||||||||    
T  44719197 tttttggaatccttaaaaagtgtcccggggacactcgttaacaagacc 44719150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 40377159 - 40377011
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||||||||||||||||| ||||||| ||||  | ||||||||||| ||  | ||||  ||||||| |||||||||||| || ||||||    
T  40377159 gggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttct 40377060  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||||| |||||||||||||| |||   ||||||||||||||||    
T  40377059 tcttttggaatccttaaagagtgcccaaggggcactcgttaacaagacc 40377011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 31745397 - 31745520
Alignment:
Q  62 ggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttctt 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||    
T  31745397 ggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 31745496  T
Q  162 cttttggaattcttaaagagtgcc 185  Q
    ||||| ||||  ||||||||||||    
T  31745497 cttttagaatctttaaagagtgcc 31745520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 45584641 - 45584502
Alignment:
Q  76 cctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattctt 175  Q
    ||||||||  |||||||||||| ||||||| |||||||||| |||| |||||   |||||||||||||||||||| |||||||||||||||||||| |||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  176 aaagagtgccccaggaaaactcgttaacaagacctttaaa 215  Q
    |||||||||||| ||   | |||||||||||||| |||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagacccttaaa 45584502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 4039621 - 4039717
Alignment:
Q  91 ttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgcccc 187  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtgcccc 4039717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 36393592 - 36393475
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||||||||||||||||||| ||||||  |||||||||||||||  |||||  ||||||| | |||||||||||||||||| |||||||| |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  170 attcttaaagagtgcccc 187  Q
    || |||||||||||||||    
T  36393492 atccttaaagagtgcccc 36393475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 31652739 - 31652592
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||| |||||||| |||||| |||||   ||||||| |||||||||||| |||||||||    
T  31652739 gggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttct 31652640  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    | ||||| ||| |||||||||| | || |  | ||||||||||||||||    
T  31652639 t-ttttgaaatccttaaagagttctccggagacactcgttaacaagacc 31652592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 50974563 - 50974686
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||  |||| | ||||||| |||||||||||| ||||||| |    
T  50974563 gggcactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataattttt 50974662  T
Q  161 tcttttggaattcttaaagagtgc 184  Q
    ||||||| ||| ||| ||||||||    
T  50974663 tcttttgaaatccttcaagagtgc 50974686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 5787434 - 5787577
Alignment:
Q  64 cactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttct 163  Q
    |||||||||| | |||||||   |||||||||| |||||||| |||||| |||||||  ||||| | ||||||||||| |||||||| ||| ||||||||    
T  5787434 cactagttaaagtctttaaaatataacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttct 5787533  T
Q  164 tttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    ||| |||| ||||||||||| ||||| || |||||||||||||||    
T  5787534 ttt-gaatccttaaagagtgtcccagaaatactcgttaacaagac 5787577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 12148288 - 12148409
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||| ||||| ||||||||  ||||||  ||||||| ||||||| |||| ||||| | |    
T  12148288 gggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataatattt 12148387  T
Q  161 tcttttggaattcttaaagagt 182  Q
    | ||||| ||||||||||||||    
T  12148388 ttttttgaaattcttaaagagt 12148409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 5851650 - 5851529
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||| ||| ||||||||||||||||||||||| ||  ||| |||||||||||||||  |||||| ||| ||| | |||||||||| || ||||||    
T  5851650 gggcactagataaagcctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttct 5851553  T
Q  161 tcttttggaattcttaaagagtgc 184  Q
    ||||||| ||| ||||||||||||    
T  5851552 tcttttgaaatccttaaagagtgc 5851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 34445738 - 34445638
Alignment:
Q  109 taatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    ||||||||||||  ||||||| ||||||| ||||||||||||  ||||||||||||||||||| |||||||||||| || ||   |||||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcgttaacaagac 34445639  T
Q  209 c 209  Q
    |    
T  34445638 c 34445638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 42850094 - 42850175
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataa 150  Q
    |||||| |||||||||| ||| ||||||||||||||||| |||| ||||||||  |||||| ||||||||||||||||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataa 42850175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 25302172 - 25302041
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaa 177  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||   |||||| ||| ||| |||||||||||  || |||| || ||||||||| |||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  178 agagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||  |  || | ||||||||||||||||    
T  25302072 agagtgttctggggacactcgttaacaagacc 25302041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 40203076 - 40203191
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    |||||| ||||||||||||||||    | ||||||| ||||||||||||||  ||||| | ||||||| |||||||||| | |||||||||| ||||| |    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgta 40203175  T
Q  170 attcttaaagagtgcc 185  Q
    || |||||||||||||    
T  40203176 atccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 5115641 - 5115718
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    |||||| |||||||  ||||| | |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  5115641 tgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtgc 5115718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 25095683 - 25095604
Alignment:
Q  104 atatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||||||||||||||  |||| | ||||||| |||||||||| | ||||||||||||||| |||| |||||||||||    
T  25095683 atatgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtg 25095604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 28171507 - 28171590
Alignment:
Q  97 taaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaaga 180  Q
    ||||||| |||||||| |||||||   |||| | |||||||||||||||||||| ||||||| ||||||| |||| ||||||||    
T  28171507 taaaaatttatgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 36321649 - 36321739
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    ||||||||| |||||||||||||||  ||||||| ||| |||||||||| || |  |||||| ||| |||||| || ||||||||||||||    
T  36321649 ataaaaatacatgtaatcaatgcattggaaatcgaaatgtttaacttttctaaagaataattacttgttttggtatgcttaaagagtgccc 36321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 48947321 - 48947177
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||| |||||||||||||||| | || ||||| | |||||||| |||||  ||||| | ||  ||| || |||||| || |||||| ||    
T  48947321 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataattact 48947222  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    |  ||| | || |||||||| |||||||||   ||||||||||||    
T  48947221 taatttagtatgcttaaagaatgccccaggggcactcgttaacaa 48947177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 4521032 - 4521143
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaac 195  Q
    ||||||||| |||||||||||||||  ||||| | ||| ||||||||||||| |  |||||  ||| |||| | || |||||||||||||| |||   ||    
T  4521032 ataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttagtatgcttaaagagtgcccgagg--cac 4521129  T
Q  196 tcgttaacaagacc 209  Q
    ||||||||||||||    
T  4521130 tcgttaacaagacc 4521143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 42851095 - 42851147
Alignment:
Q  152 ataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    |||||||||||||||||||||||| |||||||| |||| || ||||||||||||    
T  42851095 ataatttcttcttttggaattctt-aagagtgcaccagaaacactcgttaacaa 42851147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 13954126 - 13954241
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttctttt 166  Q
    |||||||||||||||||||  || ||||  | ||||| |||||||||| |||||  ||||||  ||| ||| | ||||||||||  |||||||||||| |    
T  13954126 tagttaaggcctttaaatgaaaatttattgtgaaaatgtatgtaatca-tgcattggaaatcaaaatttttgatttttttataaagtaatttcttcttct 13954224  T
Q  167 ggaattcttaaagagtg 183  Q
     |||| |||||||||||    
T  13954225 agaatccttaaagagtg 13954241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 34596118 - 34596223
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||||||| |||||| | || ||| ||| ||||||||||||||   |||||| ||||||| |   |||||||| ||||||||||||||| ||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttga--attttataaaataatttcttcttttaga 34596215  T
Q  170 attcttaa 177  Q
    || |||||    
T  34596216 atccttaa 34596223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 12636335 - 12636414
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaa 178  Q
    ||||||| ||||||||||| ||  ||||||| |||| || ||||||| |||| || |||| |||||||||||| ||||||    
T  12636335 aaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttggaatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 50328308 - 50328402
Alignment:
Q  63 gcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataattt 158  Q
    |||||| ||||| | |||||||| ||||||||||||||||||| | |||| || | |||  |||||  ||||||||| |||||||||| |||||||    
T  50328308 gcactaattaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatatttaa-ttttttataaaataattt 50328402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 33744162 - 33744247
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    |||| |||||||||||||||||   |||||| ||||||| ||||||| | || |||||| ||| ||||  ||| ||||||||||||    
T  33744162 aaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtgc 33744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 5597763 - 5597711
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||||||||||  |||||||||||||||  |||  ||||||||||    
T  5597763 aatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtg 5597711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 31206427 - 31206306
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||  ||||||| | |||||||||| |||||||||    
T  31206427 gggcattagttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttct 31206328  T
Q  161 tcttttggaattcttaaagagt 182  Q
     ||||| |||| ||||||||||    
T  31206327 actttttgaatccttaaagagt 31206306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 45368729 - 45368838
Alignment:
Q  78 tttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaa 177  Q
    |||||||||||||||||||| ||||||| | |||||| ||||||  |||| | |||||||||||||||||||| |||||||||| ||||||||| |||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  178 agagtgcccc 187  Q
    ||||||||||    
T  45368829 agagtgcccc 45368838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 5217748 - 5217890
Alignment:
Q  62 ggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttctt 161  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||| |||||||||||| || |||| |     
T  5217748 ggcactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat- 5217846  T
Q  162 cttttggaattcttaaagagtgccccaggaaaactcgttaacaaga 207  Q
     |||| |||| ||||||||||| |||||| | ||||||||||||||    
T  5217847 -tttttgaatccttaaagagtgtcccagg-acactcgttaacaaga 5217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 38956992 - 38956884
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||  ||||| | |||||| ||    
T  38956992 ttaaggtctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttaga 38956893  T
Q  170 attcttaaa 178  Q
    || ||||||    
T  38956892 atccttaaa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  69 gttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgg 168  Q
    |||||||||||||||||||||||| |||| ||||| |  |||||||||| ||| ||||| | ||| ||| |||||||||||| || |||||||||||| |    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaatgt--gtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  169 aattcttaaagagt 182  Q
    ||| ||||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 9633040 - 9632961
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaactttttt 146  Q
    ||||||||| |||||||||| || |||| || ||||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  9633040 tagttaaggtctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgactttttt 9632961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 7513319 - 7513431
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaac 195  Q
    ||||||||| |||||||||||||||   |||||| ||| ||||| |||| || |  |||||| ||| |||||  || ||||||||||||||| |||| ||    
T  7513319 ataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttaatttttctaaagaataattgcttgttttgatatgcttaaagagtgccccgggaacac 7513418  T
Q  196 tcgttaacaagac 208  Q
    |||||||||||||    
T  7513419 tcgttaacaagac 7513431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 42760145 - 42760282
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||| | |||||||| | | |||||  ||||||||||||||||  ||||| | || |||| | ||||||||   ||||||||| ||||||||    
T  42760145 ttaagacctttacaaggtaactttttaaaaaaaattatgtaatcaatgcattggaaattgaaacatttgatttttttatggaataatttctccttttgga 42760244  T
Q  170 attcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    || |||||||||||  |||||  ||||||||||||||||    
T  42760245 atgcttaaagagtg-tccaggggaactcgttaacaagac 42760282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||||||||||||||   || ||||||||| ||||||||||||   |||||| |||||||    ||||||||| ||||||| ||||||| ||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgactttttataaaataatttattcttttaga 20169815  T
Q  170 attcttaaagag 181  Q
    ||  ||||||||    
T  20169816 atctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 2124093 - 2124203
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaactttttt--ataacataatttcttcttttggaattcttaaagagtgccccaggaaaact 196  Q
    ||||| ||| ||||||||||||  ||||| | |||| |||||||||||  |||  ||||||||||||||| ||||  ||||||| || | | |||| |||    
T  2124093 aaaatttatataatcaatgcattcgaaattgaaatacttaacttttttttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacact 2124192  T
Q  197 cgttaacaaga 207  Q
    |||||||||||    
T  2124193 cgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 10335092 - 10335135
Alignment:
Q  141 ttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  10335092 ttttttatagaataatttattcttttggaattcttaaagagtgc 10335135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7044383 - 7044445
Alignment:
Q  124 aaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    |||||| ||| ||| ||||||| ||||  |||||||||||||| |||| ||||||||||||||    
T  7044383 aaatcgaaatgtttgactttttaataaattaatttcttcttttagaatccttaaagagtgccc 7044445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 9124077 - 9124131
Alignment:
Q  154 aatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagac 208  Q
    |||||||| ||||||||| ||||||||||||||| | |  |||||||||||||||    
T  9124077 aatttctttttttggaatgcttaaagagtgccccggaagcactcgttaacaagac 9124131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 2258183 - 2258228
Alignment:
Q  164 tttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||| || ||||||||||||| | |||||||||||||||||||||    
T  2258183 tttgggatgcttaaagagtgccacgggaaaactcgttaacaagacc 2258228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 4573144 - 4573077
Alignment:
Q  141 ttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||||| | ||||||||| |||||||||| |||||||| ||| || |||  ||||||||||||||||    
T  4573144 ttttttatgatataatttctccttttggaatgcttaaagactgctcc-ggagcactcgttaacaagacc 4573077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 17521001 - 17521077
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaactttttt 146  Q
    ||||| ||||||||| ||||||| | |||||  ||| |||||||||| |||  |||| || ||||||||||||||||    
T  17521001 ttaagacctttaaatagtaactttttataaatgtatgtgtaatcaatacattggaaaacgaaatatttaactttttt 17521077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 22209485 - 22209401
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||||||||||||  |  ||||||  |||||||||||||||||    |||||| ||||||||  ||| |||||||||||    
T  22209485 aaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtg 22209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 8170148 - 8170000
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||||| |||||||  |||||||||||| || |||| | ||||||||| ||| ||||||  ||||||| |||||||||||| |||||||||    
T  8170148 gggcactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttct 8170049  T
Q  161 tcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||||| |||||||||||  || |||  ||| ||||||||||||    
T  8170048 tcttttggaatccttaaagagtgttccgggagtacttgttaacaagacc 8170000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 48137900 - 48137790
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||||||||| || ||||||| |||| ||||||||||||||| |||||||||||||||  |||||  ||||||| |||||||||||| |||||||||    
T  48137900 gggcactagttaatgcttttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttct 48137801  T
Q  161 tcttttggaat 171  Q
    |||||||||||    
T  48137800 tcttttggaat 48137790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 47507711 - 47507579
Alignment:
Q  77 ctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattctta 176  Q
    |||||||||||||||| |||| |||| || |||||||||| |||| ||||| | ||| ||| | |||||||||| || |||||||||||| |||| ||||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  177 aagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||||| |  | ||||||||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagacc 47507579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 42493798 - 42493699
Alignment:
Q  89 acttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttat-aacataatttcttcttttggaattcttaaagagtgcccc 187  Q
    ||||||||| ||||||| |||||||||||||||  |||||  ||||||| |||||||||| || |||||||||||||||||||| |||||||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtgcccc 42493699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 38452283 - 38452169
Alignment:
Q  66 ctagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttt 165  Q
    |||||||||||||||||| | ||| |||| || ||||||| ||||| ||||||||| ||||| | ||||||| |||||||||||| ||||||||||||||    
T  38452283 ctagttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttt 38452184  T
Q  166 tggaattcttaaaga 180  Q
    |  ||| ||||||||    
T  38452183 ttaaatccttaaaga 38452169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 30412909 - 30413030
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttct 160  Q
    ||||||| |||||||||||||||| |||| ||||||  ||||||| | ||||||||||||| | ||||| ||||||| ||||| | |||| ||| |||||    
T  30412909 gggcactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttct 30413008  T
Q  161 tcttttggaattcttaaagagt 182  Q
    ||||||| ||| ||||||||||    
T  30413009 tcttttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 5248179 - 5248093
Alignment:
Q  94 tcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaaga 180  Q
    |||||||||||| |||||||||||||||   ||||| ||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaaga 5248093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 46684550 - 46684626
Alignment:
Q  66 ctagttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaactt 142  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||||| ||||||| ||||    
T  46684550 ctagttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 2964146 - 2964056
Alignment:
Q  81 aaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaat 171  Q
    |||| |||||||||||||||||||| ||||||||||| |||  |||||  ||| ||||| |||||||||| ||||||||||||||| ||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaat 2964056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 15034793 - 15034935
Alignment:
Q  67 tagttaaggcctttaaatggtaacttatcataaaaatatatgtaatc-aatgcatctgaaatcggaatatttaacttttttataacataatttcttcttt 165  Q
    ||||||||||||||||| |||||||||| || ||||||  ||||||| |||||||  || |||| ||||||| || ||||||||| ||| |||||| | |    
T  15034793 tagttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgac-tttttataaaatattttcttttct 15034891  T
Q  166 tggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    |||||| ||||||||||| || | |   ||||||||||||||||    
T  15034892 tggaatccttaaagagtgtcctaagggcactcgttaacaagacc 15034935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 16878809 - 16878676
Alignment:
Q  76 cctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctga-aatcggaatatttaacttttttataacataatttcttcttttggaattct 174  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||  || | ||||  |    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcat-tgagaatcgaaatatttaacttttttatgaaataatttctctttattgaatctt 16878711  T
Q  175 taaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||| ||| | || ||  ||||||||||||    
T  16878710 taaagagtgtcccggaaacacctgttaacaagacc 16878676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 32829152 - 32829095
Alignment:
Q  152 ataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  32829152 ataatttctccttttggaatgcttaaagaatgccccaggaacactcgttaacaagacc 32829095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 45375405 - 45375462
Alignment:
Q  131 aatatttaacttttttataacataa-tttcttcttttggaattcttaaagagtgcccc 187  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  45375405 aatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgcccc 45375462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 2741252 - 2741136
Alignment:
Q  99 aaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcg 198  Q
    ||||||| ||||||||||||||| ||||||  ||||||| | ||||| |||| ||||||| |||||||  ||| |||||||||||| ||| ||  | |||    
T  2741252 aaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtgctccaagagcaatcg 2741153  T
Q  199 ttaacaagacctttaaa 215  Q
    | || ||||||||||||    
T  2741152 tcaagaagacctttaaa 2741136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 676397 - 676483
Alignment:
Q  96 ataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||||| |||||||||||||| | |||||| ||||||||||||||| |||| |||||| ||| |||| ||||  ||||||||||    
T  676397 ataaaaatatgtgtaatcaatgcatttaaaatcgaaatatttaactttttaataa-ataattacttattttagaatgtttaaagagtg 676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 44495307 - 44495216
Alignment:
Q  87 taacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaa 178  Q
    |||||| | |||||||||| ||||||||||| ||   |||||| ||||||||| |||||||||| ||||| ||||| |||| ||||||||||    
T  44495307 taacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataatatcttcatttgaaattcttaaa 44495216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 43670517 - 43670427
Alignment:
Q  72 aaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttc 162  Q
    |||| ||||||||||||| |||||||||||| ||||||||||| ||||||  |||||  ||| ||| | |||||||||| || ||||||||    
T  43670517 aaggtctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttc 43670427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 36285774 - 36285912
Alignment:
Q  68 agttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatattt-aacttttttataacataatttcttctttt 166  Q
    ||||||| ||||||||  ||||||||||||||||  |||||||||||||| ||| ||||||  ||||||| |  |||||||||| ||  |||||||||||    
T  36285774 agttaagtcctttaaaatgtaacttatcataaaa--atatgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttt 36285871  T
Q  167 ggaattcttaaagagtgccccaggaaaactcgttaacaaga 207  Q
      |||| |||||||||  |||  ||| ||||||||| ||||    
T  36285872 aaaatttttaaagagtatcccgagaacactcgttaataaga 36285912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 1360607 - 1360531
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    ||||||||||||||  ||||||| || |||||||||||||| || |||||| ||  ||||||||| |||||||||||    
T  1360607 tgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaattttggaatgcttaaagagtg 1360531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 47305515 - 47305567
Alignment:
Q  61 gggcactagttaaggcctttaaatggtaacttatcataaaaatatatgtaatc 113  Q
    |||||||||||||||  |||||||||||||||||||| ||||||| |||||||    
T  47305515 gggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatc 47305567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 17157804 - 17157907
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaactttttt-ataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaa 205  Q
    ||||||||||||||  ||||| | || |||| |||||||| ||   ||||||||| |||||||||| |||||||||||||||| |   ||||||||||||    
T  17157804 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaataatttctccttttggaatgcttaaagagtgccccaagggcactcgttaacaa 17157903  T
Q  206 gacc 209  Q
    ||||    
T  17157904 gacc 17157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  70 ttaaggcctttaaatggtaacttatcataaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttgga 169  Q
    ||||| |||||||||||||||||   || ||||||||| ||||||||||||   |||||| |||||||    ||||||||| ||||||| ||||||| ||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgactttttataaaataatttattcttttaga 44391525  T
Q  170 attcttaaagag 181  Q
    ||  ||||||||    
T  44391526 atctttaaagag 44391537  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 10031956 - 10032057
Alignment:
Q  107 tgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaag 206  Q
    ||||||||||||||  ||||||| || |||||||||||| | || |||||| ||  ||||||||| ||||||||||| ||| ||   |||||||||| ||    
T  10031956 tgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcactcgttaacgag 10032055  T
Q  207 ac 208  Q
    ||    
T  10032056 ac 10032057  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 8920736 - 8920815
Alignment:
Q  105 tatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgc 184  Q
    ||||||||||||||||  ||||| | || |||| |||||| |||   ||||||||| |||||||||| ||||||||||||    
T  8920736 tatgtaatcaatgcattggaaattgaaacatttgacttttctatggaataatttctccttttggaatgcttaaagagtgc 8920815  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 7596180 - 7596261
Alignment:
Q  106 atgtaatcaatgcatctgaaatcggaatatttaact-tttttataacataatttcttcttttggaattcttaaagagtgccc 186  Q
    |||||||||||||||  ||||| | ||| ||| ||| ||||||| | |||||||||||||||  ||| ||||||||||||||    
T  7596180 atgtaatcaatgcattggaaattgaaatttttgactctttttatgaaataatttcttcttttaaaatgcttaaagagtgccc 7596261  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 27986683 - 27986789
Alignment:
Q  98 aaaaatatatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactc 197  Q
    |||||||||||||||||||||||| |  || | |||||||||||||| | ||  | ||| ||||||||||||||  |||||||||| | |||| | ||||    
T  27986683 aaaaatatatgtaatcaatgcatcgg--attgaaatatttaacttttatgta--aaaatatcttcttttggaatgtttaaagagtgtctcagg-acactc 27986777  T
Q  198 gttaacaagacc 209  Q
    ||||||| ||||    
T  27986778 gttaacatgacc 27986789  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 25176390 - 25176434
Alignment:
Q  174 ttaaagagtgccccaggaaaactcgttaacaagacctttaaaata 218  Q
    ||||||||||||| ||| | | |||||||||||||||||||||||    
T  25176390 ttaaagagtgccctagggacattcgttaacaagacctttaaaata 25176434  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 35754079 - 35754039
Alignment:
Q  143 ttttataacataatttcttcttttggaattcttaaagagtg 183  Q
    |||||||| |||||||||| ||||| |||||||||||||||    
T  35754079 ttttataaaataatttctttttttgaaattcttaaagagtg 35754039  T

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Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 18142 - 18226
Alignment:
Q  105 tatgtaatcaatgcatctgaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccag 189  Q
    ||||||||||||| ||| | ||| | ||||||| |||||||||| ||||||||||||||||| | || ||||||||||| |||||    
T  18142 tatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccag 18226  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 28834 - 28912
Alignment:
Q  131 aatatttaacttttttataacataatttcttcttttggaattcttaaagagtgccccaggaaaactcgttaacaagacc 209  Q
    ||||||||| ||||||||   |||||||||||||||  |||  ||||||||| | | ||||| ||||||||||||||||    
T  28834 aatatttaatttttttatggaataatttcttcttttaaaatgtttaaagagtactctaggaacactcgttaacaagacc 28912  T

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