View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3375_low_4 (Length: 623)
Name: NF3375_low_4
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 271 - 608
Target Start/End: Complemental strand, 11653770 - 11653426
Alignment:
| Q |
271 |
atgcagatgaacgattccaggtcaaaaaataacctaaagccaccc-ctcgcaattttttgttgaagtaacacatatattgtttgtttataagaaagaatt |
369 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11653770 |
atgcagatggatgattctaggtcaaaaaataacctaaagccacccgctcacaatttttggttgaagtaacacatatattgtttgtttataagagagaatt |
11653671 |
T |
|
| Q |
370 |
ataaaaagtgcatgaaataaaaattgcaaattttaaaccaaaacttctcgctaa----ctccaccaatacaaagcaaatatattgtttccattttattta |
465 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11653670 |
attaaaagtgcatgaaataaaaattgcaaattttaaaccaaaacttctcgctaattaactccaccaatacaaagcaaatatattgtttccattttattta |
11653571 |
T |
|
| Q |
466 |
taacactgccaaaagttgattcaacataaagaatcaaataataatattcttaatcaaaatataaagcagttaaattagaaatg-ttataatgtgcttatt |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11653570 |
taacactgccaaaagttgattcaacataaagaatcaaataataatattcttaatcaaaatataaagcagttaaattagaaatgtttataatgtgcttatt |
11653471 |
T |
|
| Q |
565 |
gaacgttccttc-ttgcatccacggtgacattgaaccttcatcgt |
608 |
Q |
| |
|
||| |||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
11653470 |
gaatgttccttctttggattcacggtgacattgaaccttcatcgt |
11653426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 11654023 - 11653849
Alignment:
| Q |
25 |
agaattccccttgcttctgaatttgcaacgttgtcgcccaaatttttaattgtatctgtaattgattgactaaaattgatctttcaatagaaacaaaacg |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11654023 |
agaattccccttgcttctga-tttgcaacgttgacgctcaaatcattaattgtatctgtaattgattgactaaaattgatctttcaatagaaacaaaacg |
11653925 |
T |
|
| Q |
125 |
ggcaccgctataagaagcaaaatcagaaaaaggcctcgcaagatgacaagacgacgaacaacacaatgtcatactgagacgacg |
208 |
Q |
| |
|
||||| ||| |||| || |||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
11653924 |
agcaccactacaagacgcgaaatcaaaaaaaggtctcg--------caagacgacgaacaacacaacgtcatactcagacgacg |
11653849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 5348564 - 5348656
Alignment:
| Q |
43 |
gaatttgcaacgttgtcgcccaaatttttaattgtatctgtaattgattgactaaaattgatctttcaatagaaacaaaacgggcaccgctataaga |
139 |
Q |
| |
|
|||| |||||||| | ||||||||| || |||| ||||||||||||||| |||||||||||||||||| ||| ||||| |||||| |||||| |
|
|
| T |
5348564 |
gaatctgcaacgtcgacgcccaaatcattgattgaatctgtaattgattg----aaattgatctttcaataggaaccaaacgaacaccgcaataaga |
5348656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 34609955 - 34609877
Alignment:
| Q |
43 |
gaatttgcaacgttgtcgcccaaatttttaattgtatctgtaattgattgactaaaattgatctttcaatagaaacaaa |
121 |
Q |
| |
|
|||| ||||||||| ||||||||| || |||| || ||||| ||||||||| || ||||||||||||| |||||||| |
|
|
| T |
34609955 |
gaatctgcaacgttcacgcccaaatcattgattgcatttgtaactgattgactgaagttgatctttcaatggaaacaaa |
34609877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 15836201 - 15836164
Alignment:
| Q |
170 |
acaagacgacgaacaacacaatgtcatactgagacgac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
15836201 |
acaagacgacgaacaacacaatgtcacacttagacgac |
15836164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 35220214 - 35220178
Alignment:
| Q |
283 |
gattccaggtcaaaaaataacctaaagccacccctcg |
319 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
35220214 |
gattctaggtcaaaaaataacctaaaaccacccctcg |
35220178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University