View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3375_low_42 (Length: 238)
Name: NF3375_low_42
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5900979 - 5901200
Alignment:
| Q |
1 |
gaactgcagcaggcactccattcgcattggttaacggaatacttttactagcattgtaaacattcataacattctgcacaccattcaagaacatctgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5900979 |
gaactgcagcaggcactccattcgcattggttaacggaatacttttactagcattgtaaacattcataacattctgcacaccattcaagaacatctgaac |
5901078 |
T |
|
| Q |
101 |
ccggttcttctcttgttccatacaaaccctttcttgatccaacatcactttctgctccttcaaacatatatactcatcaagcatctcacctaaactcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5901079 |
ccggttcttctcttgttccatacaaaccctttcttgatccaacatcactttctgctccttcaaacatatatactcatcaagcatctcacctaaactcatc |
5901178 |
T |
|
| Q |
201 |
aaactcttcggcacctagaaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5901179 |
aaactcttcggcacctagaaat |
5901200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University