View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3375_low_43 (Length: 236)

Name: NF3375_low_43
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3375_low_43
NF3375_low_43
[»] chr7 (8 HSPs)
chr7 (1-223)||(35147641-35147863)
chr7 (46-184)||(3203828-3203971)
chr7 (45-169)||(3203755-3203882)
chr7 (99-169)||(31860856-31860926)
chr7 (45-169)||(3203935-3204062)
chr7 (45-169)||(35153494-35153619)
chr7 (98-169)||(3203665-3203736)
chr7 (45-152)||(35153290-35153397)
[»] chr4 (11 HSPs)
chr4 (45-208)||(3343473-3343640)
chr4 (46-169)||(3343900-3344026)
chr4 (46-169)||(10982267-10982390)
chr4 (45-184)||(39289948-39290092)
chr4 (74-156)||(3343616-3343698)
chr4 (24-120)||(3343682-3343778)
chr4 (126-169)||(43107938-43107981)
chr4 (74-162)||(39290070-39290158)
chr4 (105-169)||(43107827-43107891)
chr4 (105-162)||(10982239-10982296)
chr4 (74-162)||(3343727-3343815)
[»] chr5 (8 HSPs)
chr5 (45-168)||(10927968-10928094)
chr5 (45-184)||(18960566-18960710)
chr5 (33-162)||(12513104-12513236)
chr5 (24-152)||(12513027-12513155)
chr5 (45-162)||(12513281-12513401)
chr5 (24-169)||(12513187-12513332)
chr5 (172-213)||(12513288-12513329)
chr5 (105-169)||(12513364-12513429)
[»] chr8 (2 HSPs)
chr8 (98-169)||(9321609-9321680)
chr8 (105-168)||(9321699-9321762)
[»] chr2 (7 HSPs)
chr2 (105-160)||(18483937-18483992)
chr2 (75-213)||(35711448-35711589)
chr2 (79-169)||(38179607-38179697)
chr2 (46-183)||(35687252-35687394)
chr2 (100-169)||(18483169-18483238)
chr2 (98-183)||(11879908-11879995)
chr2 (74-156)||(11880050-11880132)
[»] chr1 (5 HSPs)
chr1 (46-150)||(9846151-9846258)
chr1 (126-172)||(9846023-9846069)
chr1 (59-155)||(20806962-20807061)
chr1 (117-169)||(9846135-9846187)
chr1 (45-119)||(3547023-3547097)
[»] chr3 (1 HSPs)
chr3 (80-159)||(25203541-25203620)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35147641 - 35147863
Alignment:
Q  1 atttcaaattttaaaagaaatactgcaacaattcaagtatttcacatgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35147641 atttcaaattttaaaagaaataccgcaacaattcaagtatttcacatgcaataaaccaagtatcatgactcatgaatatatgcaataatccagatgccaa 35147740  T
Q  101 gaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatacgtaacaagccaagtggtatctatgcaataaa 200  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  35147741 gaggaatgcatgcaacaagttaagtgttacccatacaataaaccaagtgtcatgattcattaggaatacgcaacaagccaagtggtatctatgcaataaa 35147840  T
Q  201 ccaagtgtcatgagtaatacatg 223  Q
    |||||||||||||||||||||||    
T  35147841 ccaagtgtcatgagtaatacatg 35147863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 3203971 - 3203828
Alignment:
Q  46 atgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaa 142  Q
    |||||||||||||||| |||||| ||||||   ||| |||||| ||  || |||  ||||| ||| |||| | ||||  ||| ||||||||| |||||||    
T  3203971 atgcaataaaccaagtgtcatgaatcatgatgaatacatgcaacaagtcaagtgttaagagaaatacatgtagcaagtcaaatgttacccatgcaataaa 3203872  T
Q  143 ccaagtgtcatgactcatgaggaatacgt--aacaagccaagtg 184  Q
    ||||| ||||||||||||||||||||| |  |||||||||||||    
T  3203871 ccaagcgtcatgactcatgaggaatacatccaacaagccaagtg 3203828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 3203882 - 3203755
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||||  |||||||||||||   ||| || ||| || ||| ||| |||||| ||| ||||||  |||| ||| |||||||||   ||||    
T  3203882 catgcaataaaccaagcgtcatgactcatgaggaatacatccaacaagccaagtgtcaagagaaatacatgcagaaagccaaatgttacccatgtcataa 3203783  T
Q  142 accaagtgtcatgactcatgaggaatac 169  Q
    | ||||||||||||||||||||||||||    
T  3203782 aacaagtgtcatgactcatgaggaatac 3203755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 31860856 - 31860926
Alignment:
Q  99 aagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    ||||||||| |||||||||||  ||  ||||||||| ||||||| ||||||||||||||||| ||||||||    
T  31860856 aagaggaatccatgcaacaagtcaagtgttacccatgcaataaatcaagtgtcatgactcataaggaatac 31860926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 3204062 - 3203935
Alignment:
Q  45 catgcaataaaccaagtatcatgactcat---gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||||| |||||||||||   ||||| |||||||||  || |||  |||| |||| |||||| | ||| ||  |||||  || ||||||    
T  3204062 catgcaataaaccaagtgtcatgactcatgaggaatacatgcaataagacaagtgtaaagaagaatacatgcatctagccaagtgttacatatgcaataa 3203963  T
Q  142 accaagtgtcatgactcatgaggaatac 169  Q
    |||||||||||||| |||||| ||||||    
T  3203962 accaagtgtcatgaatcatgatgaatac 3203935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 35153494 - 35153619
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||||| ||  |||||||||   ||| |||||| || ||| ||| |||||||||| ||| ||  |||| ||   |||||||| ||||||    
T  35153494 catgcaataaaccaagtgtc--gactcatgagcaatacatgcaacaaaccaagtgtcaagaggaatacatccaggaagccaagtattacccatgcaataa 35153591  T
Q  142 accaagtgtcatgactcatgaggaatac 169  Q
    |||||||||||||| |||| ||||||||    
T  35153592 accaagtgtcatgattcataaggaatac 35153619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 3203736 - 3203665
Alignment:
Q  98 caagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    |||||||||| |||||||||||  ||  |||| |||| ||||||||||||||||| |||| || ||||||||    
T  3203736 caagaggaatacatgcaacaagtcaactgttatccatgcaataaaccaagtgtcacgacttataaggaatac 3203665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 35153290 - 35153397
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaacc 144  Q
    ||||||||||||||| | |||||||| |||||||  ||||| ||  || |||  ||||| ||| |||||| ||||| ||  ||||| ||| |||||||||    
T  35153290 catgcaataaaccaaatgtcatgacttatgaatacttgcaacaagtcaagtgtaaagagaaatacatgcagcaagcaaagtgttacacatgcaataaacc 35153389  T
Q  145 aagtgtca 152  Q
    ||||||||    
T  35153390 aagtgtca 35153397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 3343640 - 3343473
Alignment:
Q  45 catgcaataaaccaagtatcatgact--catgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaa 142  Q
    |||||||||||||||||||||||||   || |||   ||||||||| ||| ||| |||||||||| |||||| ||||| ||| ||||||||| |||||||    
T  3343640 catgcaataaaccaagtatcatgacaaccaagaaagcatgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaa 3343541  T
Q  143 ccaagtgtcatgactcatgaggaatac--gtaacaagccaagtggtatctatgcaataaaccaagtgt 208  Q
    |||||||||| ||||||||||||||||  ||| |||||||| ||  ||| ||||||||||||||||||    
T  3343540 ccaagtgtcacgactcatgaggaatacatgtagcaagccaactgtcatccatgcaataaaccaagtgt 3343473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 3344026 - 3343900
Alignment:
Q  46 atgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaa 142  Q
    ||||||||| |||| | ||||||||||| |   ||| |||||| || ||| ||| ||| || ||||||||||||||||||    ||||||||||||||||    
T  3344026 atgcaataagccaaatgtcatgactcattagaaatacatgcaacaaaccaagtgtcaaaagtaatgcatgcaacaagctatgtcttacccatacaataaa 3343927  T
Q  143 ccaagtgtcatgactcatgaggaatac 169  Q
    |||||||| ||||||||| ||||||||    
T  3343926 ccaagtgtgatgactcattaggaatac 3343900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 10982267 - 10982390
Alignment:
Q  46 atgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaacca 145  Q
    |||||||||||||||| |||||||||||||||| |||||| || |||  || ||| |||||| |||||   |||| ||   | ||| || || |||||||    
T  10982267 atgcaataaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaaggaatacatgcggtaagccaagtatcaccaatgcagtaaacca 10982366  T
Q  146 agtgtcatgactcatgaggaatac 169  Q
    ||||||||||||||||||||||||    
T  10982367 agtgtcatgactcatgaggaatac 10982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 39289948 - 39290092
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||||| |||||||||||||   | | || ||| || ||| ||| |||||| ||| |||||| ||||| ||| |||||  ||||||| |    
T  39289948 catgcaataaaccaagtgtcatgactcatgatgaacacatacaacaagccaagtgtcaagagaaatacatgcagcaagccaaatgttacttatacaatga 39290047  T
Q  142 accaagtgtcatgactcatgaggaatac--gtaacaagccaagtg 184  Q
    |||||||||||||||  |||||||||||  | |||||||||||||    
T  39290048 accaagtgtcatgacatatgaggaatacatgcaacaagccaagtg 39290092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 3343698 - 3343616
Alignment:
Q  74 gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgac 156  Q
    ||||| |||||| || ||||||| |||||||||||||| || ||||| ||| ||||| ||| ||||||||||||| |||||||    
T  3343698 gaatacatgcaacaagccaggtgtcaagaggaatgcattcagcaagccaaatgttactcatgcaataaaccaagtatcatgac 3343616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 3343778 - 3343682
Alignment:
Q  24 tgcaacaattcaagtatttcacatgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagc 120  Q
    |||| ||| |||||| || | ||||||||||||||| | |||||||| ||||||| |||||| || ||| ||  |||||||||| ||||||||||||    
T  3343778 tgcagcaagtcaagtgttacccatgcaataaaccaaatgtcatgactaatgaatacatgcaacaagccaagtttcaagaggaatacatgcaacaagc 3343682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 43107938 - 43107981
Alignment:
Q  126 gttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  43107938 gttacccgtgcaataaaccaagtgtcatgactcatgaggaatac 43107981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 39290070 - 39290158
Alignment:
Q  74 gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatga 162  Q
    ||||| |||||| || ||| ||| |||||| ||| ||||||||||| |||  |||| |||| |||||||| |||||| |||||||||||    
T  39290070 gaatacatgcaacaagccaagtgtcaagagaaatacatgcaacaagttaagtgttatccatgcaataaactaagtgtgatgactcatga 39290158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 43107827 - 43107891
Alignment:
Q  105 aatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    |||||||||||| ||||||  ||||| ||| |||| || |||||||||||||||| |||||||||    
T  43107827 aatgcatgcaactagctaagtgttactcatgcaatgaatcaagtgtcatgactcacgaggaatac 43107891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 10982239 - 10982296
Alignment:
Q  105 aatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatga 162  Q
    |||||||| |||||||||   |||||  || |||||||||||||||||||||||||||    
T  10982239 aatgcatgtaacaagctaggtgttacttatgcaataaaccaagtgtcatgactcatga 10982296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 3343815 - 3343727
Alignment:
Q  74 gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatga 162  Q
    ||||| |||||| || ||| ||| ||||| |||| |||||| ||||  ||  ||||||||| ||||||||||| |||||||||| ||||    
T  3343815 gaatacatgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtcatgactaatga 3343727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 10928094 - 10927968
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||| ||||||||| |||||||||| ||   ||| ||||||||| ||| ||| ||||||||||||||||| ||||| ||  ||||||||| |||||     
T  10928094 catgcaacaaaccaagtgtcatgactcaggagaaatacatgcaataagccaagtgtcaagaggaatgcatgcaccaagccaagtgttacccatgcaatag 10927995  T
Q  142 accaagtgtcatgactcatgaggaata 168  Q
    | |||||||||||||||||||||||||    
T  10927994 atcaagtgtcatgactcatgaggaata 10927968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 18960566 - 18960710
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||||| |||  ||||||||   ||| ||||||||| |||||||||||||| ||| |||||||||||| ||  || |||||| ||||||    
T  18960566 catgcaataaaccaagtgtcacaactcatgagaaatacatgcaataacccaggtgccaagagaaatacatgcaacaagccaagtgtaacccatgcaataa 18960665  T
Q  142 accaagtgtcatgactcatgaggaatac--gtaacaagccaagtg 184  Q
    || || ||||| ||||||||||||||||  | |||||||||||||    
T  18960666 actaaatgtcacgactcatgaggaatacatgcaacaagccaagtg 18960710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 12513236 - 12513104
Alignment:
Q  33 tcaagtatttcacatgcaataaaccaagtatcatgactcatgaa---tatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagtta 129  Q
    |||||| || ||||||||||||||||||| |||||||| |||||   || |||||| ||| || ||| |||||||||| |||||||||||   |  ||||    
T  12513236 tcaagtgttacacatgcaataaaccaagtgtcatgacttatgaagaatacatgcaacaattcaagtgtcaagaggaatacatgcaacaagtcgagtgtta 12513137  T
Q  130 cccatacaataaaccaagtgtcatgactcatga 162  Q
    ||||| |||||||||||||||||||||||||||    
T  12513136 cccatgcaataaaccaagtgtcatgactcatga 12513104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 12513155 - 12513027
Alignment:
Q  24 tgcaacaattcaagtatttcacatgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaa 123  Q
    |||||||| || ||| || | ||||||||||||||||| |||||||||||||||| |||||| |||||| ||| |||||||||| |||||| ||| | ||    
T  12513155 tgcaacaagtcgagtgttacccatgcaataaaccaagtgtcatgactcatgaatacatgcaacaatccaagtgtcaagaggaatacatgcagcaaaccaa 12513056  T
Q  124 aagttacccatacaataaaccaagtgtca 152  Q
       |||||||| ||||||| ||| |||||    
T  12513055 tcattacccatgcaataaatcaaatgtca 12513027  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 12513401 - 12513281
Alignment:
Q  45 catgcaataaaccaagtatcatgactcat---gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataa 141  Q
    ||||||||||||||| | ||| |||||||   ||||| |||||| ||  || ||| || |||| |  |||||||||||| ||  ||||||||| ||||||    
T  12513401 catgcaataaaccaattgtcacgactcataaggaatacatgcaacaagacaagtgacaggagggacacatgcaacaagccaagtgttacccatgcaataa 12513302  T
Q  142 accaagtgtcatgactcatga 162  Q
    |||||||||||||||||||||    
T  12513301 accaagtgtcatgactcatga 12513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 12513332 - 12513187
Alignment:
Q  24 tgcaacaattcaagtatttcacatgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaa 123  Q
    ||||||||  ||||| || | ||||||||||||||||| |||||||||||||||| |||| | ||   | ||| ||| |||||| ||| ||  | |  ||    
T  12513332 tgcaacaagccaagtgttacccatgcaataaaccaagtgtcatgactcatgaatacatgccacaagttaagtgtcaataggaatacattcacgatgtcaa 12513233  T
Q  124 aagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
      ||||| ||| |||||||||||||||||||||| |||| ||||||    
T  12513232 gtgttacacatgcaataaaccaagtgtcatgacttatgaagaatac 12513187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 12513329 - 12513288
Alignment:
Q  172 aacaagccaagtggtatctatgcaataaaccaagtgtcatga 213  Q
    ||||||||||||| || | |||||||||||||||||||||||    
T  12513329 aacaagccaagtgttacccatgcaataaaccaagtgtcatga 12513288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 12513429 - 12513364
Alignment:
Q  105 aatgcatgcaacaagctaaaagttaccc-atacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    ||||| |||||||||||||  ||||||| || ||||||||||| ||||| ||||||| ||||||||    
T  12513429 aatgcgtgcaacaagctaagtgttaccccatgcaataaaccaattgtcacgactcataaggaatac 12513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 9321680 - 9321609
Alignment:
Q  98 caagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    |||||||||| |||| ||||| | ||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  9321680 caagaggaatacatgtaacaaaccaagtgttacccatgcaataaaccaagtgtcatgactcatgaggaatac 9321609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 9321762 - 9321699
Alignment:
Q  105 aatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaata 168  Q
    ||||||||||||||||| |  ||||| ||| |||| ||||||||||||| | ||||||||||||    
T  9321762 aatgcatgcaacaagcttagtgttacacatgcaatgaaccaagtgtcataattcatgaggaata 9321699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 18483992 - 18483937
Alignment:
Q  105 aatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcat 160  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  18483992 aatgcatgcaacaagctaagtgttacccattcaataaaccaagtgtcatgactcat 18483937  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 35711448 - 35711589
Alignment:
Q  75 aatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaa-agttacccatacaataaaccaagtgtcatgactcatgaggaatac--gt 171  Q
    |||| ||||||||| ||| ||| ||||||||||||||||||||||| |||  || || ||| ||||||||||||||| |  |||||| ||||||||  |     
T  35711448 aatacatgcaataagccaagtgtcaagaggaatgcatgcaacaagccaaagtgtcactcatgcaataaaccaagtgttaaaactcataaggaatacatga 35711547  T
Q  172 aacaagccaagtggtatctatgcaataaaccaagtgtcatga 213  Q
    | ||| ||||||| || | |||||||||| ||||||||||||    
T  35711548 agcaaaccaagtgttacccatgcaataaatcaagtgtcatga 35711589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 38179607 - 38179697
Alignment:
Q  79 tatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    ||||||| |||| | ||| |||||| ||||||||||||||| |||  ||||  ||| |||||||||||||||||||||||||||| |||||    
T  38179607 tatgcaacaatctaagtgtcaagagtaatgcatgcaacaagttaagtgttatacatgcaataaaccaagtgtcatgactcatgagaaatac 38179697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 35687252 - 35687394
Alignment:
Q  46 atgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaa 142  Q
    |||||||||||||||| |||||||| || |   ||  |||||||||| ||  |  |||||||||| |||||| ||||| ||  || |||||| |||||||    
T  35687252 atgcaataaaccaagtgtcatgacttataagaaatgcatgcaataattcaaatttcaagaggaatacatgcagcaagccaagtgtcacccatgcaataaa 35687351  T
Q  143 ccaagtgtcatgactcatgaggaatac--gtaacaagccaagt 183  Q
     |||||||||||||||||||| |||||  | ||||||||||||    
T  35687352 tcaagtgtcatgactcatgagaaatacatgcaacaagccaagt 35687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 18483238 - 18483169
Alignment:
Q  100 agaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    |||| |||||||| |||| |||||  ||||||||| ||| ||| |||||||||||||| |||||||||||    
T  18483238 agagtaatgcatgaaacatgctaagtgttacccatgcaaaaaatcaagtgtcatgacttatgaggaatac 18483169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 11879995 - 11879908
Alignment:
Q  98 caagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac--gtaacaagccaagt 183  Q
    |||||||||| |||||| ||||| ||  ||||||||   |||||||||| |||||||| |||||||||||||  | ||||||||||||    
T  11879995 caagaggaatacatgcatcaagccaagtgttacccaggaaataaaccaaatgtcatgattcatgaggaatacatgcaacaagccaagt 11879908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 11880050 - 11880132
Alignment:
Q  74 gaatatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgac 156  Q
    ||||| |||||| || ||| |||  |||| ||||||||||||||||  ||  || |||||| |||||||||||||||||||||    
T  11880050 gaatacatgcaacaaaccaagtgtaaagatgaatgcatgcaacaagacaagtgtaacccatgcaataaaccaagtgtcatgac 11880132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 9846151 - 9846258
Alignment:
Q  46 atgcaataaaccaagtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaa 142  Q
    |||||||||||||||| |||||||||| ||   ||| || ||| || ||| ||| |||| |||||||||| ||||||||||  ||||||||||||| |||    
T  9846151 atgcaataaaccaagtgtcatgactcacgaggaatacatacaacaagccatgtgtcaagtggaatgcatgaaacaagctaagtgttacccatacaacaaa 9846250  T
Q  143 ccaagtgt 150  Q
    ||||||||    
T  9846251 ccaagtgt 9846258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 9846023 - 9846069
Alignment:
Q  126 gttacccatacaataaaccaagtgtcatgactcatgaggaatacgta 172  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9846023 gttacccatacaataaaccaagtgtcttgactcatgtggaatacgta 9846069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 20806962 - 20807061
Alignment:
Q  59 agtatcatgactcatga---atatatgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatga 155  Q
    |||||||||||||||||   ||| |||||| || |||  || ||||||||||  ||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  20806962 agtatcatgactcatgaggaatacatgcaacaaaccaaatgtcaagaggaatatatgcaacaaggcaaatgttacccatgcaataaaccaagtgtcatga 20807061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 9846135 - 9846187
Alignment:
Q  117 aagctaaaagttacccatacaataaaccaagtgtcatgactcatgaggaatac 169  Q
    |||||||  |||||| || |||||||||||||||||||||||| |||||||||    
T  9846135 aagctaagtgttacctatgcaataaaccaagtgtcatgactcacgaggaatac 9846187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 3547097 - 3547023
Alignment:
Q  45 catgcaataaaccaagtatcatgactcatgaatatatgcaataatccaggtgccaagaggaatgcatgcaacaag 119  Q
    ||||||||||| ||||| |||||||||| ||||| |||||| || ||| ||| ||||| |||| |||||| ||||    
T  3547097 catgcaataaatcaagtgtcatgactcacgaatacatgcaacaagccaagtgtcaagatgaatacatgcagcaag 3547023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 25203620 - 25203541
Alignment:
Q  80 atgcaataatccaggtgccaagaggaatgcatgcaacaagctaaaagttacccatacaataaaccaagtgtcatgactca 159  Q
    ||||||||| ||| ||| |||||| | |||||||||||||||||  || ||| ||  |||||||||||||| ||||||||    
T  25203620 atgcaataaaccaagtgtcaagagtagtgcatgcaacaagctaagtgtaaccaatgtaataaaccaagtgtgatgactca 25203541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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