View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_48 (Length: 227)
Name: NF3375_low_48
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5900650 - 5900876
Alignment:
| Q |
1 |
ctcattggatcacaattctccgcaatatcaagaaccataacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacactcctc |
100 |
Q |
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| T |
5900650 |
ctcattggatcacaattctccgcaatatcaagaaccacaacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacacacctc |
5900749 |
T |
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| Q |
101 |
ggattagacgtgccccaggttcagacatgtgtttgtgtttgtgtcgtgtccatattcgtgcttcatatgtgtataataattaaccagccctaacaaaaac |
200 |
Q |
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| T |
5900750 |
ggattagacgtgtcccaggttcagacatgtgtttgtgtctgtgtcgtgtccgtattcgtgattcatatgtgtataataattaaccagccctaacaaaaac |
5900849 |
T |
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| Q |
201 |
ataactaacataaccttatcaagtaaa |
227 |
Q |
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| T |
5900850 |
ataactaacatcaccttatcaagtaaa |
5900876 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 27277782 - 27277810
Alignment:
| Q |
81 |
atgaagcacatacactcctcggattagac |
109 |
Q |
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| T |
27277782 |
atgaagcacatacactcctcggattagac |
27277810 |
T |
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