View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3375_low_50 (Length: 217)

Name: NF3375_low_50
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3375_low_50
NF3375_low_50
[»] chr5 (2 HSPs)
chr5 (18-101)||(28222949-28223032)
chr5 (18-97)||(9071613-9071692)
[»] chr7 (1 HSPs)
chr7 (18-88)||(40320744-40320814)
[»] chr8 (1 HSPs)
chr8 (19-97)||(45519129-45519207)
[»] chr6 (1 HSPs)
chr6 (28-97)||(6627340-6627409)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 28223032 - 28222949
Alignment:
Q  18 gtttttgtgctagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaatttgaagaaggata 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28223032 gtttttgtactagatatctgatttatgagttttgcttgaattgataaatttatgaagatgattctataagtttgaagaaggata 28222949  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 9071613 - 9071692
Alignment:
Q  18 gtttttgtgctagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaatttgaagaag 97  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9071613 gtttttgtgttagatatctgatttacgagttttgcttgaattgatgaatttatgaagatgattctataagtttgaagaag 9071692  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 40320814 - 40320744
Alignment:
Q  18 gtttttgtgctagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaat 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40320814 gtttttgtgttagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaat 40320744  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 45519129 - 45519207
Alignment:
Q  19 tttttgtgctagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaatttgaagaag 97  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  45519129 tttttgtgttaaacatctgatttatgagttttgcttgaattgatgaatttacgaagatgattctataagtttgaagaag 45519207  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 6627409 - 6627340
Alignment:
Q  28 tagatatctgatttatgagttttgcttgaattgatgaatttatgaagatgattctataaatttgaagaag 97  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||  |||||||||    
T  6627409 tagatacctgatttatgagttttgcttgaattgataattttatgaagatgattctgtaagcttgaagaag 6627340  T

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